Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0699

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0698 and DvMF_0699 are separated by 44 nucleotidesDvMF_0699 and DvMF_0700 are separated by 708 nucleotides DvMF_0698: DvMF_0698 - protein of unknown function DUF214 (RefSeq), at 845,118 to 846,248 _0698 DvMF_0699: DvMF_0699 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 846,293 to 847,762 _0699 DvMF_0700: DvMF_0700 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 848,471 to 849,817 _0700 Position (kb) 846 847 848Strain fitness (log2 ratio) -1 0 1 2at 845.463 kb on + strand, within DvMF_0698at 845.631 kb on - strand, within DvMF_0698at 845.844 kb on + strand, within DvMF_0698at 845.983 kb on - strand, within DvMF_0698at 845.995 kb on + strand, within DvMF_0698at 846.680 kb on - strand, within DvMF_0699at 846.747 kb on + strand, within DvMF_0699at 846.747 kb on + strand, within DvMF_0699at 846.830 kb on - strand, within DvMF_0699at 847.645 kb on + strandat 848.054 kb on - strandat 848.222 kb on - strandat 848.269 kb on + strandat 848.531 kb on - strandat 848.666 kb on + strand, within DvMF_0700at 848.701 kb on - strand, within DvMF_0700at 848.706 kb on - strand, within DvMF_0700

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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845,463 + DvMF_0698 0.31 +0.8
845,631 - DvMF_0698 0.45 +0.6
845,844 + DvMF_0698 0.64 +0.0
845,983 - DvMF_0698 0.76 +0.8
845,995 + DvMF_0698 0.78 +1.9
846,680 - DvMF_0699 0.26 +0.9
846,747 + DvMF_0699 0.31 +0.4
846,747 + DvMF_0699 0.31 +1.3
846,830 - DvMF_0699 0.37 +0.4
847,645 + +0.0
848,054 - +1.0
848,222 - +1.1
848,269 + +0.4
848,531 - +1.2
848,666 + DvMF_0700 0.14 +0.6
848,701 - DvMF_0700 0.17 +1.0
848,706 - DvMF_0700 0.17 +0.9

Or see this region's nucleotide sequence