Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0325

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0324 and DvMF_0325 overlap by 13 nucleotidesDvMF_0325 and DvMF_0326 overlap by 1 nucleotides DvMF_0324: DvMF_0324 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 377,050 to 379,008 _0324 DvMF_0325: DvMF_0325 - methyl-viologen-reducing hydrogenase delta subunit (RefSeq), at 378,996 to 380,501 _0325 DvMF_0326: DvMF_0326 - hydrogenase, putative (RefSeq), at 380,501 to 381,592 _0326 Position (kb) 378 379 380 381Strain fitness (log2 ratio) -3 -2 -1 0 1at 378.049 kb on - strand, within DvMF_0324at 378.049 kb on - strand, within DvMF_0324at 378.100 kb on - strand, within DvMF_0324at 378.100 kb on - strand, within DvMF_0324at 378.387 kb on - strand, within DvMF_0324at 378.721 kb on - strandat 378.984 kb on + strandat 379.359 kb on + strand, within DvMF_0325at 379.747 kb on + strand, within DvMF_0325at 379.777 kb on + strand, within DvMF_0325at 380.165 kb on + strand, within DvMF_0325at 380.237 kb on + strand, within DvMF_0325at 380.371 kb on + strandat 380.459 kb on - strandat 380.531 kb on + strandat 380.780 kb on + strand, within DvMF_0326at 381.162 kb on + strand, within DvMF_0326at 381.421 kb on + strand, within DvMF_0326at 381.459 kb on + strand, within DvMF_0326at 381.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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378,049 - DvMF_0324 0.51 -0.3
378,049 - DvMF_0324 0.51 -1.6
378,100 - DvMF_0324 0.54 -0.3
378,100 - DvMF_0324 0.54 -2.4
378,387 - DvMF_0324 0.68 -1.2
378,721 - +0.1
378,984 + -1.0
379,359 + DvMF_0325 0.24 -3.5
379,747 + DvMF_0325 0.50 -2.0
379,777 + DvMF_0325 0.52 -1.7
380,165 + DvMF_0325 0.78 -0.9
380,237 + DvMF_0325 0.82 -2.5
380,371 + -0.7
380,459 - -1.3
380,531 + -2.7
380,780 + DvMF_0326 0.26 -1.1
381,162 + DvMF_0326 0.61 -1.5
381,421 + DvMF_0326 0.84 -1.9
381,459 + DvMF_0326 0.88 +0.6
381,485 - -2.5

Or see this region's nucleotide sequence