Experiment: 8 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0009 and DvMF_0010 are separated by 164 nucleotides DvMF_0010 and DvMF_0011 are separated by 2 nucleotides
DvMF_0009: DvMF_0009 - protein of unknown function DUF814 (RefSeq), at 10,937 to 12,919
_0009
DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547
_0010
DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 14,550 to 15,929
_0011
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2
3 at 12.245 kb on - strand, within DvMF_0009 at 12.287 kb on + strand, within DvMF_0009 at 12.414 kb on + strand, within DvMF_0009 at 12.497 kb on - strand, within DvMF_0009 at 12.641 kb on - strand, within DvMF_0009 at 12.716 kb on - strand, within DvMF_0009 at 12.822 kb on + strand at 12.839 kb on + strand at 12.908 kb on + strand at 13.217 kb on + strand at 13.288 kb on - strand, within DvMF_0010 at 13.396 kb on + strand, within DvMF_0010 at 13.419 kb on - strand, within DvMF_0010 at 13.581 kb on - strand, within DvMF_0010 at 13.585 kb on - strand, within DvMF_0010 at 13.762 kb on - strand, within DvMF_0010 at 13.771 kb on + strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.970 kb on - strand, within DvMF_0010 at 14.039 kb on + strand, within DvMF_0010 at 14.201 kb on - strand, within DvMF_0010 at 14.213 kb on + strand, within DvMF_0010 at 14.218 kb on + strand, within DvMF_0010 at 14.233 kb on + strand, within DvMF_0010 at 14.238 kb on + strand, within DvMF_0010 at 14.366 kb on - strand, within DvMF_0010 at 14.468 kb on + strand at 14.691 kb on + strand, within DvMF_0011 at 14.798 kb on - strand, within DvMF_0011 at 14.846 kb on + strand, within DvMF_0011 at 14.854 kb on - strand, within DvMF_0011 at 14.924 kb on + strand, within DvMF_0011 at 14.990 kb on + strand, within DvMF_0011 at 15.002 kb on + strand, within DvMF_0011 at 15.032 kb on + strand, within DvMF_0011 at 15.093 kb on - strand, within DvMF_0011 at 15.323 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.460 kb on - strand, within DvMF_0011
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 37C remove 12,245 - DvMF_0009 0.66 +1.9 12,287 + DvMF_0009 0.68 +0.8 12,414 + DvMF_0009 0.74 +0.5 12,497 - DvMF_0009 0.79 +0.3 12,641 - DvMF_0009 0.86 -0.4 12,716 - DvMF_0009 0.90 +0.4 12,822 + -0.8 12,839 + +0.5 12,908 + +0.0 13,217 + +2.4 13,288 - DvMF_0010 0.14 +2.1 13,396 + DvMF_0010 0.21 +2.3 13,419 - DvMF_0010 0.23 +2.0 13,581 - DvMF_0010 0.34 +2.6 13,585 - DvMF_0010 0.34 +1.6 13,762 - DvMF_0010 0.46 +2.3 13,771 + DvMF_0010 0.47 +2.3 13,819 - DvMF_0010 0.50 +1.7 13,819 - DvMF_0010 0.50 +2.4 13,970 - DvMF_0010 0.61 +3.7 14,039 + DvMF_0010 0.65 +2.0 14,201 - DvMF_0010 0.76 +1.1 14,213 + DvMF_0010 0.77 +1.4 14,218 + DvMF_0010 0.77 +1.9 14,233 + DvMF_0010 0.78 +2.1 14,238 + DvMF_0010 0.79 +2.1 14,366 - DvMF_0010 0.88 +1.2 14,468 + +2.1 14,691 + DvMF_0011 0.10 +1.0 14,798 - DvMF_0011 0.18 +0.5 14,846 + DvMF_0011 0.21 -0.3 14,854 - DvMF_0011 0.22 +0.2 14,924 + DvMF_0011 0.27 +0.3 14,990 + DvMF_0011 0.32 +1.2 15,002 + DvMF_0011 0.33 +0.6 15,032 + DvMF_0011 0.35 +0.6 15,093 - DvMF_0011 0.39 +1.2 15,323 + DvMF_0011 0.56 +0.9 15,452 + DvMF_0011 0.65 +0.3 15,452 + DvMF_0011 0.65 +0.7 15,452 + DvMF_0011 0.65 +0.3 15,452 + DvMF_0011 0.65 +0.1 15,452 + DvMF_0011 0.65 -0.1 15,460 - DvMF_0011 0.66 +0.5
Or see this region's nucleotide sequence