Experiment: tungstate 0.05 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5269 and Pf6N2E2_5270 are separated by 298 nucleotides Pf6N2E2_5270 and Pf6N2E2_5271 overlap by 8 nucleotides Pf6N2E2_5271 and Pf6N2E2_5272 are separated by 99 nucleotides Pf6N2E2_5272 and Pf6N2E2_5273 are separated by 0 nucleotides
Pf6N2E2_5269 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 6,063,593 to 6,064,843
_5269
Pf6N2E2_5270 - Type III effector HopPmaJ, at 6,065,142 to 6,065,480
_5270
Pf6N2E2_5271 - FIG00953380: hypothetical protein, at 6,065,473 to 6,065,769
_5271
Pf6N2E2_5272 - Dihydroneopterin triphosphate epimerase, at 6,065,869 to 6,066,249
_5272
Pf6N2E2_5273 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,066,250 to 6,066,810
_5273
Position (kb)
6065
6066 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 6064.555 kb on + strand, within Pf6N2E2_5269 at 6064.556 kb on - strand, within Pf6N2E2_5269 at 6064.614 kb on + strand, within Pf6N2E2_5269 at 6064.614 kb on + strand, within Pf6N2E2_5269 at 6064.614 kb on + strand, within Pf6N2E2_5269 at 6064.615 kb on - strand, within Pf6N2E2_5269 at 6064.615 kb on - strand, within Pf6N2E2_5269 at 6064.743 kb on + strand at 6064.743 kb on + strand at 6064.744 kb on - strand at 6064.813 kb on - strand at 6064.878 kb on - strand at 6064.881 kb on + strand at 6064.881 kb on + strand at 6064.881 kb on + strand at 6064.881 kb on + strand at 6064.882 kb on - strand at 6064.882 kb on - strand at 6064.882 kb on - strand at 6064.914 kb on + strand at 6064.914 kb on + strand at 6064.934 kb on + strand at 6064.934 kb on + strand at 6064.934 kb on + strand at 6064.935 kb on - strand at 6064.935 kb on - strand at 6064.935 kb on - strand at 6065.390 kb on - strand, within Pf6N2E2_5270 at 6065.448 kb on - strand at 6065.448 kb on - strand at 6065.465 kb on + strand at 6065.466 kb on - strand at 6065.466 kb on - strand at 6065.535 kb on - strand, within Pf6N2E2_5271 at 6065.555 kb on + strand, within Pf6N2E2_5271 at 6065.567 kb on + strand, within Pf6N2E2_5271 at 6065.631 kb on - strand, within Pf6N2E2_5271 at 6065.631 kb on - strand, within Pf6N2E2_5271 at 6065.631 kb on - strand, within Pf6N2E2_5271 at 6065.847 kb on + strand at 6065.870 kb on + strand at 6065.877 kb on + strand at 6066.071 kb on + strand, within Pf6N2E2_5272 at 6066.103 kb on + strand, within Pf6N2E2_5272 at 6066.103 kb on + strand, within Pf6N2E2_5272 at 6066.122 kb on + strand, within Pf6N2E2_5272 at 6066.122 kb on + strand, within Pf6N2E2_5272 at 6066.123 kb on - strand, within Pf6N2E2_5272 at 6066.251 kb on + strand at 6066.251 kb on + strand at 6066.251 kb on + strand at 6066.252 kb on - strand at 6066.252 kb on - strand at 6066.252 kb on - strand at 6066.252 kb on - strand at 6066.252 kb on - strand at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.540 kb on + strand, within Pf6N2E2_5273 at 6066.541 kb on - strand, within Pf6N2E2_5273 at 6066.541 kb on - strand, within Pf6N2E2_5273 at 6066.541 kb on - strand, within Pf6N2E2_5273 at 6066.541 kb on - strand, within Pf6N2E2_5273 at 6066.542 kb on + strand, within Pf6N2E2_5273 at 6066.542 kb on + strand, within Pf6N2E2_5273 at 6066.542 kb on + strand, within Pf6N2E2_5273 at 6066.542 kb on + strand, within Pf6N2E2_5273 at 6066.542 kb on + strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.543 kb on - strand, within Pf6N2E2_5273 at 6066.597 kb on - strand, within Pf6N2E2_5273 at 6066.597 kb on - strand, within Pf6N2E2_5273 at 6066.684 kb on - strand, within Pf6N2E2_5273 at 6066.684 kb on - strand, within Pf6N2E2_5273 at 6066.698 kb on + strand, within Pf6N2E2_5273 at 6066.698 kb on + strand, within Pf6N2E2_5273 at 6066.698 kb on + strand, within Pf6N2E2_5273 at 6066.699 kb on - strand, within Pf6N2E2_5273 at 6066.699 kb on - strand, within Pf6N2E2_5273 at 6066.699 kb on - strand, within Pf6N2E2_5273
Per-strain Table
Position Strand Gene LocusTag Fraction tungstate 0.05 M remove 6,064,555 + Pf6N2E2_5269 0.77 +0.4 6,064,556 - Pf6N2E2_5269 0.77 +1.4 6,064,614 + Pf6N2E2_5269 0.82 +0.1 6,064,614 + Pf6N2E2_5269 0.82 -0.5 6,064,614 + Pf6N2E2_5269 0.82 +0.6 6,064,615 - Pf6N2E2_5269 0.82 -1.0 6,064,615 - Pf6N2E2_5269 0.82 +0.0 6,064,743 + +0.1 6,064,743 + -0.0 6,064,744 - +0.8 6,064,813 - -0.8 6,064,878 - +0.6 6,064,881 + +0.0 6,064,881 + -0.8 6,064,881 + +0.4 6,064,881 + -0.0 6,064,882 - -1.1 6,064,882 - -0.7 6,064,882 - -0.8 6,064,914 + -0.4 6,064,914 + -0.3 6,064,934 + -0.0 6,064,934 + +0.4 6,064,934 + -0.8 6,064,935 - -1.2 6,064,935 - -1.3 6,064,935 - -0.1 6,065,390 - Pf6N2E2_5270 0.73 +0.1 6,065,448 - +0.2 6,065,448 - +0.4 6,065,465 + -0.4 6,065,466 - -1.9 6,065,466 - +1.3 6,065,535 - Pf6N2E2_5271 0.21 -0.3 6,065,555 + Pf6N2E2_5271 0.28 -1.2 6,065,567 + Pf6N2E2_5271 0.32 -0.1 6,065,631 - Pf6N2E2_5271 0.53 -1.1 6,065,631 - Pf6N2E2_5271 0.53 -1.6 6,065,631 - Pf6N2E2_5271 0.53 -0.8 6,065,847 + -0.9 6,065,870 + +0.6 6,065,877 + +0.1 6,066,071 + Pf6N2E2_5272 0.53 -0.8 6,066,103 + Pf6N2E2_5272 0.61 +0.4 6,066,103 + Pf6N2E2_5272 0.61 +0.6 6,066,122 + Pf6N2E2_5272 0.66 +0.5 6,066,122 + Pf6N2E2_5272 0.66 +0.4 6,066,123 - Pf6N2E2_5272 0.67 +0.6 6,066,251 + +1.5 6,066,251 + +0.9 6,066,251 + -0.3 6,066,252 - -0.0 6,066,252 - +1.8 6,066,252 - -0.0 6,066,252 - +3.8 6,066,252 - +1.1 6,066,540 + Pf6N2E2_5273 0.52 +0.6 6,066,540 + Pf6N2E2_5273 0.52 -1.6 6,066,540 + Pf6N2E2_5273 0.52 -1.5 6,066,540 + Pf6N2E2_5273 0.52 -1.5 6,066,540 + Pf6N2E2_5273 0.52 +0.9 6,066,540 + Pf6N2E2_5273 0.52 -0.0 6,066,540 + Pf6N2E2_5273 0.52 +0.2 6,066,541 - Pf6N2E2_5273 0.52 -0.1 6,066,541 - Pf6N2E2_5273 0.52 +0.7 6,066,541 - Pf6N2E2_5273 0.52 +0.3 6,066,541 - Pf6N2E2_5273 0.52 -0.5 6,066,542 + Pf6N2E2_5273 0.52 +0.1 6,066,542 + Pf6N2E2_5273 0.52 +0.1 6,066,542 + Pf6N2E2_5273 0.52 -0.0 6,066,542 + Pf6N2E2_5273 0.52 -0.1 6,066,542 + Pf6N2E2_5273 0.52 +0.6 6,066,543 - Pf6N2E2_5273 0.52 -0.4 6,066,543 - Pf6N2E2_5273 0.52 +0.2 6,066,543 - Pf6N2E2_5273 0.52 +0.4 6,066,543 - Pf6N2E2_5273 0.52 -0.7 6,066,543 - Pf6N2E2_5273 0.52 +0.1 6,066,543 - Pf6N2E2_5273 0.52 -0.2 6,066,543 - Pf6N2E2_5273 0.52 +1.3 6,066,597 - Pf6N2E2_5273 0.62 -0.1 6,066,597 - Pf6N2E2_5273 0.62 -0.1 6,066,684 - Pf6N2E2_5273 0.77 -0.1 6,066,684 - Pf6N2E2_5273 0.77 +0.3 6,066,698 + Pf6N2E2_5273 0.80 -0.6 6,066,698 + Pf6N2E2_5273 0.80 -0.4 6,066,698 + Pf6N2E2_5273 0.80 +0.5 6,066,699 - Pf6N2E2_5273 0.80 -2.2 6,066,699 - Pf6N2E2_5273 0.80 +0.3 6,066,699 - Pf6N2E2_5273 0.80 +0.6
Or see this region's nucleotide sequence