Experiment: tungstate 0.05 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4826 and Pf6N2E2_4827 are separated by 3 nucleotides Pf6N2E2_4827 and Pf6N2E2_4828 overlap by 4 nucleotides Pf6N2E2_4828 and Pf6N2E2_4829 are separated by 238 nucleotides Pf6N2E2_4829 and Pf6N2E2_4830 are separated by 113 nucleotides
Pf6N2E2_4826 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 5,580,861 to 5,581,697
_4826
Pf6N2E2_4827 - Lipoate-protein ligase A, at 5,581,701 to 5,582,402
_4827
Pf6N2E2_4828 - Vfr transcriptional regulator / Cyclic AMP receptor protein, at 5,582,399 to 5,583,043
_4828
Pf6N2E2_4829 - OsmC/Ohr family protein, at 5,583,282 to 5,583,704
_4829
Pf6N2E2_4830 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,583,818 to 5,584,465
_4830
Position (kb)
5582
5583
5584 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.867 kb on - strand, within Pf6N2E2_4827 at 5581.879 kb on + strand, within Pf6N2E2_4827 at 5581.959 kb on - strand, within Pf6N2E2_4827 at 5581.971 kb on + strand, within Pf6N2E2_4827 at 5581.971 kb on + strand, within Pf6N2E2_4827 at 5581.972 kb on - strand, within Pf6N2E2_4827 at 5581.972 kb on - strand, within Pf6N2E2_4827 at 5581.972 kb on - strand, within Pf6N2E2_4827 at 5582.006 kb on + strand, within Pf6N2E2_4827 at 5582.367 kb on + strand at 5582.650 kb on + strand, within Pf6N2E2_4828 at 5582.650 kb on + strand, within Pf6N2E2_4828 at 5582.651 kb on - strand, within Pf6N2E2_4828 at 5582.651 kb on - strand, within Pf6N2E2_4828 at 5582.651 kb on - strand, within Pf6N2E2_4828 at 5582.685 kb on - strand, within Pf6N2E2_4828 at 5582.685 kb on - strand, within Pf6N2E2_4828 at 5582.685 kb on - strand, within Pf6N2E2_4828 at 5582.685 kb on - strand, within Pf6N2E2_4828 at 5582.688 kb on + strand, within Pf6N2E2_4828 at 5582.688 kb on + strand, within Pf6N2E2_4828 at 5582.689 kb on - strand, within Pf6N2E2_4828 at 5582.689 kb on - strand, within Pf6N2E2_4828 at 5582.733 kb on + strand, within Pf6N2E2_4828 at 5582.813 kb on + strand, within Pf6N2E2_4828 at 5582.850 kb on + strand, within Pf6N2E2_4828 at 5582.850 kb on + strand, within Pf6N2E2_4828 at 5582.851 kb on - strand, within Pf6N2E2_4828 at 5582.851 kb on - strand, within Pf6N2E2_4828 at 5582.851 kb on - strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.885 kb on + strand, within Pf6N2E2_4828 at 5582.886 kb on - strand, within Pf6N2E2_4828 at 5582.886 kb on - strand, within Pf6N2E2_4828 at 5582.886 kb on - strand, within Pf6N2E2_4828 at 5582.893 kb on + strand, within Pf6N2E2_4828 at 5583.031 kb on + strand at 5583.031 kb on + strand at 5583.049 kb on + strand at 5583.049 kb on + strand at 5583.049 kb on + strand at 5583.102 kb on + strand at 5583.139 kb on + strand at 5583.140 kb on - strand at 5583.150 kb on + strand at 5583.150 kb on + strand at 5583.166 kb on - strand at 5583.166 kb on - strand at 5583.182 kb on + strand at 5583.182 kb on + strand at 5583.183 kb on - strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.186 kb on + strand at 5583.187 kb on - strand at 5583.196 kb on + strand at 5583.196 kb on + strand at 5583.196 kb on + strand at 5583.197 kb on - strand at 5583.210 kb on + strand at 5583.211 kb on - strand at 5583.211 kb on - strand at 5583.244 kb on + strand at 5583.244 kb on + strand at 5583.244 kb on + strand at 5583.244 kb on + strand at 5583.244 kb on + strand at 5583.244 kb on + strand at 5583.263 kb on + strand at 5583.263 kb on + strand at 5583.437 kb on + strand, within Pf6N2E2_4829 at 5583.539 kb on + strand, within Pf6N2E2_4829 at 5583.539 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.627 kb on + strand, within Pf6N2E2_4829 at 5583.628 kb on - strand, within Pf6N2E2_4829 at 5583.628 kb on - strand, within Pf6N2E2_4829 at 5583.628 kb on - strand, within Pf6N2E2_4829 at 5583.682 kb on - strand at 5583.682 kb on - strand at 5583.778 kb on + strand at 5583.779 kb on - strand at 5583.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction tungstate 0.05 M remove 5,581,584 + Pf6N2E2_4826 0.86 -0.3 5,581,584 + Pf6N2E2_4826 0.86 +1.1 5,581,584 + Pf6N2E2_4826 0.86 +0.6 5,581,584 + Pf6N2E2_4826 0.86 -0.2 5,581,584 + Pf6N2E2_4826 0.86 -1.0 5,581,584 + Pf6N2E2_4826 0.86 -0.2 5,581,584 + Pf6N2E2_4826 0.86 +0.0 5,581,584 + Pf6N2E2_4826 0.86 +0.6 5,581,584 + Pf6N2E2_4826 0.86 +0.6 5,581,867 - Pf6N2E2_4827 0.24 +0.3 5,581,879 + Pf6N2E2_4827 0.25 -0.7 5,581,959 - Pf6N2E2_4827 0.37 +1.2 5,581,971 + Pf6N2E2_4827 0.38 +1.0 5,581,971 + Pf6N2E2_4827 0.38 -0.9 5,581,972 - Pf6N2E2_4827 0.39 -1.4 5,581,972 - Pf6N2E2_4827 0.39 -0.1 5,581,972 - Pf6N2E2_4827 0.39 +1.0 5,582,006 + Pf6N2E2_4827 0.43 -1.2 5,582,367 + -0.8 5,582,650 + Pf6N2E2_4828 0.39 -0.2 5,582,650 + Pf6N2E2_4828 0.39 -0.0 5,582,651 - Pf6N2E2_4828 0.39 +1.7 5,582,651 - Pf6N2E2_4828 0.39 -1.3 5,582,651 - Pf6N2E2_4828 0.39 -0.1 5,582,685 - Pf6N2E2_4828 0.44 +1.0 5,582,685 - Pf6N2E2_4828 0.44 -0.3 5,582,685 - Pf6N2E2_4828 0.44 -0.7 5,582,685 - Pf6N2E2_4828 0.44 -1.9 5,582,688 + Pf6N2E2_4828 0.45 +1.2 5,582,688 + Pf6N2E2_4828 0.45 -2.5 5,582,689 - Pf6N2E2_4828 0.45 +1.2 5,582,689 - Pf6N2E2_4828 0.45 +0.1 5,582,733 + Pf6N2E2_4828 0.52 -0.1 5,582,813 + Pf6N2E2_4828 0.64 -0.7 5,582,850 + Pf6N2E2_4828 0.70 +0.3 5,582,850 + Pf6N2E2_4828 0.70 -0.3 5,582,851 - Pf6N2E2_4828 0.70 -1.0 5,582,851 - Pf6N2E2_4828 0.70 -0.3 5,582,851 - Pf6N2E2_4828 0.70 -0.5 5,582,885 + Pf6N2E2_4828 0.75 -0.4 5,582,885 + Pf6N2E2_4828 0.75 +0.7 5,582,885 + Pf6N2E2_4828 0.75 -0.1 5,582,885 + Pf6N2E2_4828 0.75 -2.2 5,582,885 + Pf6N2E2_4828 0.75 -1.0 5,582,885 + Pf6N2E2_4828 0.75 -0.8 5,582,885 + Pf6N2E2_4828 0.75 +3.0 5,582,885 + Pf6N2E2_4828 0.75 -0.2 5,582,886 - Pf6N2E2_4828 0.76 -1.0 5,582,886 - Pf6N2E2_4828 0.76 +0.7 5,582,886 - Pf6N2E2_4828 0.76 +0.4 5,582,893 + Pf6N2E2_4828 0.77 +0.0 5,583,031 + +0.3 5,583,031 + +0.9 5,583,049 + +0.2 5,583,049 + -0.2 5,583,049 + +0.4 5,583,102 + +0.7 5,583,139 + -1.2 5,583,140 - +1.6 5,583,150 + -1.0 5,583,150 + +0.3 5,583,166 - +0.2 5,583,166 - +1.6 5,583,182 + +0.4 5,583,182 + +0.4 5,583,183 - +2.3 5,583,186 + +0.0 5,583,186 + +0.6 5,583,186 + +0.3 5,583,186 + +0.3 5,583,186 + +0.2 5,583,186 + -0.4 5,583,186 + -0.1 5,583,187 - +0.5 5,583,196 + +0.3 5,583,196 + -0.0 5,583,196 + +0.3 5,583,197 - +0.5 5,583,210 + +1.2 5,583,211 - -1.0 5,583,211 - +1.3 5,583,244 + -0.3 5,583,244 + -0.5 5,583,244 + +1.0 5,583,244 + +0.7 5,583,244 + +0.2 5,583,244 + +0.0 5,583,263 + +0.4 5,583,263 + +0.4 5,583,437 + Pf6N2E2_4829 0.37 -1.2 5,583,539 + Pf6N2E2_4829 0.61 +0.6 5,583,539 + Pf6N2E2_4829 0.61 -0.3 5,583,627 + Pf6N2E2_4829 0.82 -0.7 5,583,627 + Pf6N2E2_4829 0.82 +0.6 5,583,627 + Pf6N2E2_4829 0.82 +0.0 5,583,627 + Pf6N2E2_4829 0.82 +0.2 5,583,627 + Pf6N2E2_4829 0.82 +0.1 5,583,627 + Pf6N2E2_4829 0.82 -0.5 5,583,627 + Pf6N2E2_4829 0.82 +0.5 5,583,628 - Pf6N2E2_4829 0.82 +0.8 5,583,628 - Pf6N2E2_4829 0.82 +1.0 5,583,628 - Pf6N2E2_4829 0.82 -0.2 5,583,682 - +0.5 5,583,682 - +0.3 5,583,778 + +1.7 5,583,779 - -0.3 5,583,812 + -0.5
Or see this region's nucleotide sequence