Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1845

Experiment: tungstate 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1843 and Pf6N2E2_1844 are separated by 201 nucleotidesPf6N2E2_1844 and Pf6N2E2_1845 are separated by 235 nucleotidesPf6N2E2_1845 and Pf6N2E2_1846 are separated by 31 nucleotides Pf6N2E2_1843 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,180,780 to 2,181,541 _1843 Pf6N2E2_1844 - MaoC-related acyl dehydratase, at 2,181,743 to 2,182,228 _1844 Pf6N2E2_1845 - FIG005548: transport protein, at 2,182,464 to 2,184,959 _1845 Pf6N2E2_1846 - FIG002465: BNR repeat protein, at 2,184,991 to 2,186,112 _1846 Position (kb) 2182 2183 2184 2185Strain fitness (log2 ratio) -2 -1 0 1 2at 2181.597 kb on + strandat 2181.598 kb on - strandat 2181.678 kb on + strandat 2181.716 kb on + strandat 2181.858 kb on - strand, within Pf6N2E2_1844at 2181.876 kb on - strand, within Pf6N2E2_1844at 2181.955 kb on - strand, within Pf6N2E2_1844at 2182.083 kb on + strand, within Pf6N2E2_1844at 2182.084 kb on - strand, within Pf6N2E2_1844at 2182.084 kb on - strand, within Pf6N2E2_1844at 2182.084 kb on - strand, within Pf6N2E2_1844at 2182.151 kb on - strand, within Pf6N2E2_1844at 2182.256 kb on - strandat 2182.325 kb on - strandat 2182.449 kb on + strandat 2182.450 kb on - strandat 2182.450 kb on - strandat 2182.563 kb on + strandat 2182.564 kb on - strandat 2182.587 kb on + strandat 2182.647 kb on - strandat 2182.707 kb on + strandat 2182.832 kb on - strand, within Pf6N2E2_1845at 2182.840 kb on + strand, within Pf6N2E2_1845at 2182.954 kb on - strand, within Pf6N2E2_1845at 2182.954 kb on - strand, within Pf6N2E2_1845at 2182.969 kb on - strand, within Pf6N2E2_1845at 2182.969 kb on - strand, within Pf6N2E2_1845at 2183.021 kb on - strand, within Pf6N2E2_1845at 2183.126 kb on + strand, within Pf6N2E2_1845at 2183.126 kb on + strand, within Pf6N2E2_1845at 2183.126 kb on + strand, within Pf6N2E2_1845at 2183.126 kb on + strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.127 kb on - strand, within Pf6N2E2_1845at 2183.183 kb on + strand, within Pf6N2E2_1845at 2183.289 kb on - strand, within Pf6N2E2_1845at 2183.341 kb on + strand, within Pf6N2E2_1845at 2183.389 kb on - strand, within Pf6N2E2_1845at 2183.437 kb on + strand, within Pf6N2E2_1845at 2183.437 kb on + strand, within Pf6N2E2_1845at 2183.510 kb on + strand, within Pf6N2E2_1845at 2183.533 kb on + strand, within Pf6N2E2_1845at 2183.602 kb on - strand, within Pf6N2E2_1845at 2183.602 kb on - strand, within Pf6N2E2_1845at 2183.709 kb on - strand, within Pf6N2E2_1845at 2183.709 kb on - strand, within Pf6N2E2_1845at 2183.945 kb on + strand, within Pf6N2E2_1845at 2183.946 kb on - strand, within Pf6N2E2_1845at 2184.176 kb on - strand, within Pf6N2E2_1845at 2184.176 kb on - strand, within Pf6N2E2_1845at 2184.230 kb on - strand, within Pf6N2E2_1845at 2184.277 kb on + strand, within Pf6N2E2_1845at 2184.277 kb on + strand, within Pf6N2E2_1845at 2184.277 kb on + strand, within Pf6N2E2_1845at 2184.277 kb on + strand, within Pf6N2E2_1845at 2184.277 kb on + strand, within Pf6N2E2_1845at 2184.278 kb on - strand, within Pf6N2E2_1845at 2184.302 kb on - strand, within Pf6N2E2_1845at 2184.403 kb on + strand, within Pf6N2E2_1845at 2184.416 kb on + strand, within Pf6N2E2_1845at 2184.417 kb on - strand, within Pf6N2E2_1845at 2184.417 kb on - strand, within Pf6N2E2_1845at 2184.417 kb on - strand, within Pf6N2E2_1845at 2184.585 kb on + strand, within Pf6N2E2_1845at 2184.792 kb on - strandat 2184.979 kb on + strandat 2185.064 kb on + strandat 2185.065 kb on - strandat 2185.067 kb on + strandat 2185.156 kb on + strand, within Pf6N2E2_1846at 2185.156 kb on + strand, within Pf6N2E2_1846at 2185.157 kb on - strand, within Pf6N2E2_1846at 2185.271 kb on + strand, within Pf6N2E2_1846at 2185.277 kb on + strand, within Pf6N2E2_1846at 2185.277 kb on + strand, within Pf6N2E2_1846at 2185.278 kb on - strand, within Pf6N2E2_1846at 2185.278 kb on - strand, within Pf6N2E2_1846at 2185.278 kb on - strand, within Pf6N2E2_1846at 2185.330 kb on - strand, within Pf6N2E2_1846at 2185.330 kb on - strandat 2185.397 kb on + strand, within Pf6N2E2_1846at 2185.397 kb on + strand, within Pf6N2E2_1846at 2185.398 kb on - strand, within Pf6N2E2_1846at 2185.479 kb on + strand, within Pf6N2E2_1846at 2185.529 kb on + strand, within Pf6N2E2_1846at 2185.553 kb on + strand, within Pf6N2E2_1846at 2185.553 kb on + strand, within Pf6N2E2_1846at 2185.553 kb on + strand, within Pf6N2E2_1846at 2185.805 kb on - strand, within Pf6N2E2_1846at 2185.903 kb on - strand, within Pf6N2E2_1846

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Per-strain Table

Position Strand Gene LocusTag Fraction tungstate 0.05 M
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2,181,597 + +0.9
2,181,598 - -0.1
2,181,678 + -0.4
2,181,716 + -0.6
2,181,858 - Pf6N2E2_1844 0.24 -1.7
2,181,876 - Pf6N2E2_1844 0.27 +1.0
2,181,955 - Pf6N2E2_1844 0.44 +0.7
2,182,083 + Pf6N2E2_1844 0.70 -0.6
2,182,084 - Pf6N2E2_1844 0.70 +0.1
2,182,084 - Pf6N2E2_1844 0.70 +0.6
2,182,084 - Pf6N2E2_1844 0.70 +0.5
2,182,151 - Pf6N2E2_1844 0.84 +1.4
2,182,256 - +0.7
2,182,325 - +1.0
2,182,449 + -0.5
2,182,450 - -0.6
2,182,450 - +0.3
2,182,563 + -0.9
2,182,564 - -0.1
2,182,587 + +0.4
2,182,647 - +0.3
2,182,707 + +0.7
2,182,832 - Pf6N2E2_1845 0.15 -0.4
2,182,840 + Pf6N2E2_1845 0.15 -1.3
2,182,954 - Pf6N2E2_1845 0.20 -2.4
2,182,954 - Pf6N2E2_1845 0.20 -0.0
2,182,969 - Pf6N2E2_1845 0.20 +0.6
2,182,969 - Pf6N2E2_1845 0.20 -0.1
2,183,021 - Pf6N2E2_1845 0.22 +1.8
2,183,126 + Pf6N2E2_1845 0.27 -0.5
2,183,126 + Pf6N2E2_1845 0.27 -1.7
2,183,126 + Pf6N2E2_1845 0.27 -0.9
2,183,126 + Pf6N2E2_1845 0.27 -0.2
2,183,127 - Pf6N2E2_1845 0.27 +0.0
2,183,127 - Pf6N2E2_1845 0.27 -2.4
2,183,127 - Pf6N2E2_1845 0.27 +1.1
2,183,127 - Pf6N2E2_1845 0.27 -0.9
2,183,127 - Pf6N2E2_1845 0.27 -0.5
2,183,127 - Pf6N2E2_1845 0.27 -0.3
2,183,183 + Pf6N2E2_1845 0.29 -0.0
2,183,289 - Pf6N2E2_1845 0.33 +0.1
2,183,341 + Pf6N2E2_1845 0.35 -0.1
2,183,389 - Pf6N2E2_1845 0.37 +1.1
2,183,437 + Pf6N2E2_1845 0.39 -1.1
2,183,437 + Pf6N2E2_1845 0.39 +0.0
2,183,510 + Pf6N2E2_1845 0.42 -1.7
2,183,533 + Pf6N2E2_1845 0.43 +0.9
2,183,602 - Pf6N2E2_1845 0.46 -1.1
2,183,602 - Pf6N2E2_1845 0.46 -1.4
2,183,709 - Pf6N2E2_1845 0.50 -1.7
2,183,709 - Pf6N2E2_1845 0.50 -0.2
2,183,945 + Pf6N2E2_1845 0.59 +0.5
2,183,946 - Pf6N2E2_1845 0.59 -0.6
2,184,176 - Pf6N2E2_1845 0.69 -0.1
2,184,176 - Pf6N2E2_1845 0.69 -0.1
2,184,230 - Pf6N2E2_1845 0.71 +0.4
2,184,277 + Pf6N2E2_1845 0.73 -0.8
2,184,277 + Pf6N2E2_1845 0.73 -0.4
2,184,277 + Pf6N2E2_1845 0.73 +0.1
2,184,277 + Pf6N2E2_1845 0.73 +0.3
2,184,277 + Pf6N2E2_1845 0.73 +1.9
2,184,278 - Pf6N2E2_1845 0.73 -0.0
2,184,302 - Pf6N2E2_1845 0.74 +1.0
2,184,403 + Pf6N2E2_1845 0.78 -0.6
2,184,416 + Pf6N2E2_1845 0.78 +0.3
2,184,417 - Pf6N2E2_1845 0.78 -1.0
2,184,417 - Pf6N2E2_1845 0.78 -1.9
2,184,417 - Pf6N2E2_1845 0.78 -1.1
2,184,585 + Pf6N2E2_1845 0.85 +1.1
2,184,792 - -0.4
2,184,979 + +0.7
2,185,064 + +0.3
2,185,065 - +0.3
2,185,067 + +0.5
2,185,156 + Pf6N2E2_1846 0.15 +0.3
2,185,156 + Pf6N2E2_1846 0.15 -0.3
2,185,157 - Pf6N2E2_1846 0.15 -1.1
2,185,271 + Pf6N2E2_1846 0.25 +0.2
2,185,277 + Pf6N2E2_1846 0.25 +0.8
2,185,277 + Pf6N2E2_1846 0.25 +0.6
2,185,278 - Pf6N2E2_1846 0.26 -0.3
2,185,278 - Pf6N2E2_1846 0.26 +0.4
2,185,278 - Pf6N2E2_1846 0.26 +0.4
2,185,330 - Pf6N2E2_1846 0.30 +0.0
2,185,330 - +0.9
2,185,397 + Pf6N2E2_1846 0.36 -0.0
2,185,397 + Pf6N2E2_1846 0.36 +0.7
2,185,398 - Pf6N2E2_1846 0.36 -0.1
2,185,479 + Pf6N2E2_1846 0.43 +1.2
2,185,529 + Pf6N2E2_1846 0.48 -0.5
2,185,553 + Pf6N2E2_1846 0.50 +0.3
2,185,553 + Pf6N2E2_1846 0.50 -0.5
2,185,553 + Pf6N2E2_1846 0.50 +1.0
2,185,805 - Pf6N2E2_1846 0.73 +1.0
2,185,903 - Pf6N2E2_1846 0.81 +0.7

Or see this region's nucleotide sequence