Experiment: D-Glucose (C); no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3924 and Ga0059261_3925 are separated by 734 nucleotides Ga0059261_3925 and Ga0059261_3926 are separated by 22 nucleotides
Ga0059261_3923: Ga0059261_3923 - Uncharacterized conserved protein, at 4,036,793 to 4,039,899
_3923
Ga0059261_3924: Ga0059261_3924 - Transposase DDE domain group 1, at 4,037,911 to 4,039,281
_3924
Ga0059261_3925: Ga0059261_3925 - Transcriptional regulators, at 4,040,016 to 4,040,594
_3925
Ga0059261_3926: Ga0059261_3926 - L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 4,040,617 to 4,044,216
_3926
Position (kb)
4040
4041 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4039.381 kb on + strand, within Ga0059261_3923 at 4039.391 kb on + strand, within Ga0059261_3923 at 4039.512 kb on + strand, within Ga0059261_3923 at 4039.512 kb on + strand, within Ga0059261_3923 at 4039.513 kb on - strand, within Ga0059261_3923 at 4039.513 kb on - strand, within Ga0059261_3923 at 4039.634 kb on - strand at 4039.634 kb on - strand at 4039.718 kb on + strand at 4039.718 kb on + strand at 4039.718 kb on + strand at 4039.718 kb on + strand at 4039.719 kb on - strand at 4039.719 kb on - strand at 4039.719 kb on - strand at 4039.719 kb on - strand at 4039.719 kb on - strand at 4039.752 kb on + strand at 4039.752 kb on + strand at 4039.752 kb on + strand at 4039.752 kb on + strand at 4039.753 kb on - strand at 4039.774 kb on - strand at 4039.958 kb on + strand at 4039.958 kb on + strand at 4039.958 kb on + strand at 4039.959 kb on - strand at 4039.959 kb on - strand at 4039.959 kb on - strand at 4039.959 kb on - strand at 4039.991 kb on + strand at 4039.991 kb on + strand at 4039.991 kb on + strand at 4039.991 kb on + strand at 4039.991 kb on + strand at 4039.991 kb on + strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4039.992 kb on - strand at 4040.018 kb on - strand at 4040.018 kb on - strand at 4040.018 kb on - strand at 4040.158 kb on + strand, within Ga0059261_3925 at 4040.158 kb on + strand, within Ga0059261_3925 at 4040.159 kb on - strand, within Ga0059261_3925 at 4040.159 kb on - strand, within Ga0059261_3925 at 4040.159 kb on - strand at 4040.159 kb on - strand, within Ga0059261_3925 at 4040.159 kb on - strand, within Ga0059261_3925 at 4040.211 kb on + strand, within Ga0059261_3925 at 4040.212 kb on - strand, within Ga0059261_3925 at 4040.232 kb on + strand, within Ga0059261_3925 at 4040.279 kb on + strand, within Ga0059261_3925 at 4040.848 kb on + strand at 4040.848 kb on + strand at 4040.848 kb on + strand at 4040.848 kb on + strand at 4040.849 kb on - strand at 4040.849 kb on - strand at 4040.849 kb on - strand at 4040.849 kb on - strand at 4041.229 kb on + strand, within Ga0059261_3926 at 4041.229 kb on + strand, within Ga0059261_3926 at 4041.230 kb on - strand, within Ga0059261_3926 at 4041.230 kb on - strand, within Ga0059261_3926 at 4041.235 kb on + strand, within Ga0059261_3926 at 4041.235 kb on + strand, within Ga0059261_3926 at 4041.283 kb on + strand, within Ga0059261_3926 at 4041.395 kb on - strand, within Ga0059261_3926 at 4041.395 kb on - strand, within Ga0059261_3926 at 4041.395 kb on - strand, within Ga0059261_3926 at 4041.472 kb on + strand, within Ga0059261_3926 at 4041.472 kb on + strand, within Ga0059261_3926 at 4041.472 kb on + strand, within Ga0059261_3926 at 4041.472 kb on + strand, within Ga0059261_3926 at 4041.473 kb on - strand, within Ga0059261_3926 at 4041.473 kb on - strand, within Ga0059261_3926
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); no added vitamins remove 4,039,381 + Ga0059261_3923 0.83 +0.3 4,039,391 + Ga0059261_3923 0.84 -0.0 4,039,512 + Ga0059261_3923 0.88 +1.1 4,039,512 + Ga0059261_3923 0.88 -2.1 4,039,513 - Ga0059261_3923 0.88 -2.1 4,039,513 - Ga0059261_3923 0.88 -2.7 4,039,634 - -2.9 4,039,634 - +0.4 4,039,718 + +0.8 4,039,718 + +1.2 4,039,718 + -3.0 4,039,718 + -1.1 4,039,719 - +0.6 4,039,719 - -1.1 4,039,719 - +0.2 4,039,719 - +0.5 4,039,719 - -0.6 4,039,752 + -1.1 4,039,752 + +0.7 4,039,752 + -1.8 4,039,752 + -0.6 4,039,753 - -1.3 4,039,774 - +0.5 4,039,958 + -1.7 4,039,958 + -0.5 4,039,958 + -0.4 4,039,959 - -1.0 4,039,959 - -4.0 4,039,959 - -0.2 4,039,959 - +0.2 4,039,991 + -0.3 4,039,991 + +0.1 4,039,991 + -1.6 4,039,991 + +0.8 4,039,991 + +0.5 4,039,991 + -1.1 4,039,992 - +1.0 4,039,992 - +1.0 4,039,992 - -1.6 4,039,992 - -0.0 4,039,992 - +1.2 4,039,992 - +0.6 4,039,992 - +1.2 4,039,992 - +0.3 4,039,992 - -0.0 4,039,992 - +1.1 4,040,018 - +1.8 4,040,018 - -3.2 4,040,018 - -1.9 4,040,158 + Ga0059261_3925 0.25 +0.9 4,040,158 + Ga0059261_3925 0.25 +0.7 4,040,159 - Ga0059261_3925 0.25 +0.6 4,040,159 - Ga0059261_3925 0.25 -0.0 4,040,159 - +0.4 4,040,159 - Ga0059261_3925 0.25 +0.6 4,040,159 - Ga0059261_3925 0.25 +0.5 4,040,211 + Ga0059261_3925 0.34 +1.3 4,040,212 - Ga0059261_3925 0.34 -0.2 4,040,232 + Ga0059261_3925 0.37 +0.6 4,040,279 + Ga0059261_3925 0.45 +0.6 4,040,848 + +2.3 4,040,848 + +1.4 4,040,848 + +1.4 4,040,848 + +0.8 4,040,849 - +1.4 4,040,849 - +2.5 4,040,849 - +0.6 4,040,849 - +0.9 4,041,229 + Ga0059261_3926 0.17 +0.4 4,041,229 + Ga0059261_3926 0.17 +1.3 4,041,230 - Ga0059261_3926 0.17 +1.0 4,041,230 - Ga0059261_3926 0.17 +1.5 4,041,235 + Ga0059261_3926 0.17 +0.3 4,041,235 + Ga0059261_3926 0.17 +1.2 4,041,283 + Ga0059261_3926 0.18 +1.0 4,041,395 - Ga0059261_3926 0.22 +1.4 4,041,395 - Ga0059261_3926 0.22 -1.4 4,041,395 - Ga0059261_3926 0.22 +1.5 4,041,472 + Ga0059261_3926 0.24 +0.6 4,041,472 + Ga0059261_3926 0.24 -0.5 4,041,472 + Ga0059261_3926 0.24 +1.3 4,041,472 + Ga0059261_3926 0.24 +1.7 4,041,473 - Ga0059261_3926 0.24 +0.6 4,041,473 - Ga0059261_3926 0.24 +0.4
Or see this region's nucleotide sequence