Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32390 and AZOBR_RS32395 overlap by 4 nucleotides AZOBR_RS32395 and AZOBR_RS32400 are separated by 64 nucleotides AZOBR_RS32400 and AZOBR_RS32405 are separated by 28 nucleotides AZOBR_RS32405 and AZOBR_RS32410 are separated by 8 nucleotides
AZOBR_RS32390: AZOBR_RS32390 - amidohydrolase, at 633,927 to 635,126
_RS32390
AZOBR_RS32395: AZOBR_RS32395 - 2-amino-thiazoline-4-carboxylic acid hydrolase, at 635,123 to 635,611
_RS32395
AZOBR_RS32400: AZOBR_RS32400 - leucine/isoleucine/valine transporter ATP-binding subunit, at 635,676 to 636,374
_RS32400
AZOBR_RS32405: AZOBR_RS32405 - ABC transporter, at 636,403 to 637,170
_RS32405
AZOBR_RS32410: AZOBR_RS32410 - branched-chain amino acid ABC transporter permease, at 637,179 to 638,246
_RS32410
Position (kb) 635
636
637 Strain fitness (log2 ratio) -1
0
1 at 635.689 kb on + strand at 635.689 kb on + strand at 635.767 kb on + strand, within AZOBR_RS32400 at 635.767 kb on + strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 635.768 kb on - strand, within AZOBR_RS32400 at 636.223 kb on + strand, within AZOBR_RS32400 at 636.223 kb on + strand, within AZOBR_RS32400 at 636.223 kb on + strand, within AZOBR_RS32400 at 636.224 kb on - strand, within AZOBR_RS32400 at 636.224 kb on - strand, within AZOBR_RS32400 at 636.224 kb on - strand, within AZOBR_RS32400 at 636.432 kb on - strand at 636.698 kb on + strand, within AZOBR_RS32405 at 636.698 kb on + strand, within AZOBR_RS32405
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 635,689 + +0.5 635,689 + -0.8 635,767 + AZOBR_RS32400 0.13 +0.7 635,767 + AZOBR_RS32400 0.13 -0.2 635,768 - AZOBR_RS32400 0.13 -1.6 635,768 - AZOBR_RS32400 0.13 -0.2 635,768 - AZOBR_RS32400 0.13 +0.0 635,768 - AZOBR_RS32400 0.13 -0.2 635,768 - AZOBR_RS32400 0.13 +1.0 635,768 - AZOBR_RS32400 0.13 +0.5 635,768 - AZOBR_RS32400 0.13 -0.1 635,768 - AZOBR_RS32400 0.13 +0.6 636,223 + AZOBR_RS32400 0.78 +0.3 636,223 + AZOBR_RS32400 0.78 -0.3 636,223 + AZOBR_RS32400 0.78 -1.0 636,224 - AZOBR_RS32400 0.78 +0.3 636,224 - AZOBR_RS32400 0.78 -0.5 636,224 - AZOBR_RS32400 0.78 -0.4 636,432 - +1.4 636,698 + AZOBR_RS32405 0.38 -1.3 636,698 + AZOBR_RS32405 0.38 +1.6
Or see this region's nucleotide sequence