Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31590 and AZOBR_RS31595 are separated by 166 nucleotides AZOBR_RS31595 and AZOBR_RS31600 overlap by 23 nucleotides AZOBR_RS31600 and AZOBR_RS31605 overlap by 4 nucleotides AZOBR_RS31605 and AZOBR_RS31610 are separated by 167 nucleotides
AZOBR_RS31590: AZOBR_RS31590 - hypothetical protein, at 453,754 to 455,442
_RS31590
AZOBR_RS31595: AZOBR_RS31595 - hypothetical protein, at 455,609 to 456,640
_RS31595
AZOBR_RS31600: AZOBR_RS31600 - RNA polymerase, at 456,618 to 457,190
_RS31600
AZOBR_RS31605: AZOBR_RS31605 - hypothetical protein, at 457,187 to 457,444
_RS31605
AZOBR_RS31610: AZOBR_RS31610 - hypothetical protein, at 457,612 to 458,124
_RS31610
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 454.718 kb on + strand, within AZOBR_RS31590 at 454.719 kb on - strand, within AZOBR_RS31590 at 454.721 kb on + strand, within AZOBR_RS31590 at 454.722 kb on - strand, within AZOBR_RS31590 at 454.782 kb on - strand, within AZOBR_RS31590 at 455.438 kb on + strand at 455.800 kb on - strand, within AZOBR_RS31595 at 455.881 kb on - strand, within AZOBR_RS31595 at 455.881 kb on - strand, within AZOBR_RS31595 at 456.535 kb on + strand, within AZOBR_RS31595 at 456.535 kb on + strand, within AZOBR_RS31595 at 456.536 kb on - strand, within AZOBR_RS31595 at 457.045 kb on - strand, within AZOBR_RS31600 at 457.045 kb on - strand, within AZOBR_RS31600 at 457.045 kb on - strand, within AZOBR_RS31600 at 457.047 kb on + strand, within AZOBR_RS31600 at 457.133 kb on + strand at 457.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 454,718 + AZOBR_RS31590 0.57 +0.9 454,719 - AZOBR_RS31590 0.57 -2.6 454,721 + AZOBR_RS31590 0.57 -0.0 454,722 - AZOBR_RS31590 0.57 -0.6 454,782 - AZOBR_RS31590 0.61 -0.6 455,438 + +0.4 455,800 - AZOBR_RS31595 0.19 +0.5 455,881 - AZOBR_RS31595 0.26 +0.0 455,881 - AZOBR_RS31595 0.26 -0.1 456,535 + AZOBR_RS31595 0.90 +1.4 456,535 + AZOBR_RS31595 0.90 +1.2 456,536 - AZOBR_RS31595 0.90 +0.3 457,045 - AZOBR_RS31600 0.75 -1.1 457,045 - AZOBR_RS31600 0.75 -1.5 457,045 - AZOBR_RS31600 0.75 -1.6 457,047 + AZOBR_RS31600 0.75 -0.4 457,133 + +0.1 457,133 + -0.9
Or see this region's nucleotide sequence