Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31125 and AZOBR_RS31130 are separated by 79 nucleotides AZOBR_RS31130 and AZOBR_RS31135 are separated by 279 nucleotides
AZOBR_RS31125: AZOBR_RS31125 - biotin synthase, at 347,194 to 348,117
_RS31125
AZOBR_RS31130: AZOBR_RS31130 - membrane protein, at 348,197 to 348,904
_RS31130
AZOBR_RS31135: AZOBR_RS31135 - pyruvate phosphate dikinase, at 349,184 to 351,877
_RS31135
Position (kb) 348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 347.383 kb on + strand, within AZOBR_RS31125 at 347.632 kb on + strand, within AZOBR_RS31125 at 347.632 kb on + strand, within AZOBR_RS31125 at 347.633 kb on - strand, within AZOBR_RS31125 at 347.633 kb on - strand, within AZOBR_RS31125 at 347.635 kb on + strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.636 kb on - strand, within AZOBR_RS31125 at 347.668 kb on + strand, within AZOBR_RS31125 at 347.669 kb on - strand, within AZOBR_RS31125 at 347.669 kb on - strand, within AZOBR_RS31125 at 347.959 kb on + strand, within AZOBR_RS31125 at 348.043 kb on + strand at 348.044 kb on - strand at 348.044 kb on - strand at 348.233 kb on + strand at 348.233 kb on + strand at 348.234 kb on - strand at 348.234 kb on - strand at 348.234 kb on - strand at 348.269 kb on + strand, within AZOBR_RS31130 at 348.270 kb on - strand, within AZOBR_RS31130 at 348.270 kb on - strand, within AZOBR_RS31130 at 348.434 kb on + strand, within AZOBR_RS31130 at 348.575 kb on + strand, within AZOBR_RS31130 at 348.575 kb on + strand, within AZOBR_RS31130 at 348.575 kb on + strand, within AZOBR_RS31130 at 348.602 kb on + strand, within AZOBR_RS31130 at 348.603 kb on - strand, within AZOBR_RS31130 at 348.603 kb on - strand, within AZOBR_RS31130 at 348.638 kb on + strand, within AZOBR_RS31130 at 348.639 kb on - strand, within AZOBR_RS31130 at 348.639 kb on - strand, within AZOBR_RS31130 at 348.671 kb on + strand, within AZOBR_RS31130 at 348.671 kb on + strand, within AZOBR_RS31130 at 348.672 kb on - strand, within AZOBR_RS31130 at 348.672 kb on - strand, within AZOBR_RS31130 at 348.987 kb on - strand at 348.987 kb on - strand at 348.987 kb on - strand at 349.017 kb on - strand at 349.161 kb on + strand at 349.161 kb on + strand at 349.214 kb on + strand at 349.355 kb on + strand at 349.355 kb on + strand at 349.356 kb on - strand at 349.362 kb on - strand at 349.379 kb on + strand at 349.757 kb on + strand, within AZOBR_RS31135 at 349.874 kb on + strand, within AZOBR_RS31135 at 349.875 kb on - strand, within AZOBR_RS31135
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 347,383 + AZOBR_RS31125 0.20 +0.8 347,632 + AZOBR_RS31125 0.47 +1.2 347,632 + AZOBR_RS31125 0.47 -0.4 347,633 - AZOBR_RS31125 0.48 +0.6 347,633 - AZOBR_RS31125 0.48 +0.2 347,635 + AZOBR_RS31125 0.48 +0.5 347,636 - AZOBR_RS31125 0.48 -2.4 347,636 - AZOBR_RS31125 0.48 -0.5 347,636 - AZOBR_RS31125 0.48 +0.8 347,636 - AZOBR_RS31125 0.48 -0.7 347,636 - AZOBR_RS31125 0.48 +1.4 347,636 - AZOBR_RS31125 0.48 +1.8 347,668 + AZOBR_RS31125 0.51 -1.4 347,669 - AZOBR_RS31125 0.51 -1.1 347,669 - AZOBR_RS31125 0.51 +0.2 347,959 + AZOBR_RS31125 0.83 -0.3 348,043 + -0.8 348,044 - -1.5 348,044 - -0.0 348,233 + -0.4 348,233 + -0.9 348,234 - +1.1 348,234 - +0.2 348,234 - -0.9 348,269 + AZOBR_RS31130 0.10 -1.3 348,270 - AZOBR_RS31130 0.10 +1.4 348,270 - AZOBR_RS31130 0.10 -1.2 348,434 + AZOBR_RS31130 0.33 +0.3 348,575 + AZOBR_RS31130 0.53 -0.2 348,575 + AZOBR_RS31130 0.53 -1.0 348,575 + AZOBR_RS31130 0.53 -1.3 348,602 + AZOBR_RS31130 0.57 +0.1 348,603 - AZOBR_RS31130 0.57 -0.2 348,603 - AZOBR_RS31130 0.57 +0.4 348,638 + AZOBR_RS31130 0.62 -1.6 348,639 - AZOBR_RS31130 0.62 +1.0 348,639 - AZOBR_RS31130 0.62 +0.5 348,671 + AZOBR_RS31130 0.67 -1.1 348,671 + AZOBR_RS31130 0.67 +1.0 348,672 - AZOBR_RS31130 0.67 -1.7 348,672 - AZOBR_RS31130 0.67 +0.4 348,987 - +0.3 348,987 - -0.4 348,987 - -0.1 349,017 - +2.4 349,161 + +1.7 349,161 + +1.2 349,214 + -0.5 349,355 + +1.3 349,355 + -1.0 349,356 - +4.0 349,362 - +1.6 349,379 + -0.2 349,757 + AZOBR_RS31135 0.21 -0.6 349,874 + AZOBR_RS31135 0.26 +0.1 349,875 - AZOBR_RS31135 0.26 +1.5
Or see this region's nucleotide sequence