Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30850 and AZOBR_RS30855 are separated by 388 nucleotides AZOBR_RS30855 and AZOBR_RS30860 overlap by 8 nucleotides
AZOBR_RS30850: AZOBR_RS30850 - hypothetical protein, at 287,430 to 289,880
_RS30850
AZOBR_RS30855: AZOBR_RS30855 - chemotaxis protein CheY, at 290,269 to 290,751
_RS30855
AZOBR_RS30860: AZOBR_RS30860 - sensor histidine kinase, at 290,744 to 293,035
_RS30860
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.360 kb on + strand, within AZOBR_RS30850 at 289.361 kb on - strand, within AZOBR_RS30850 at 289.361 kb on - strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.382 kb on - strand, within AZOBR_RS30850 at 289.382 kb on - strand, within AZOBR_RS30850 at 289.384 kb on + strand, within AZOBR_RS30850 at 289.523 kb on - strand, within AZOBR_RS30850 at 289.804 kb on + strand at 289.805 kb on - strand at 289.805 kb on - strand at 289.943 kb on - strand at 289.943 kb on - strand at 289.943 kb on - strand at 290.127 kb on + strand at 290.429 kb on + strand, within AZOBR_RS30855 at 290.429 kb on + strand, within AZOBR_RS30855 at 290.430 kb on - strand, within AZOBR_RS30855 at 290.430 kb on - strand, within AZOBR_RS30855 at 290.802 kb on + strand at 290.802 kb on + strand at 290.803 kb on - strand at 290.803 kb on - strand at 291.061 kb on - strand, within AZOBR_RS30860 at 291.321 kb on + strand, within AZOBR_RS30860 at 291.427 kb on - strand, within AZOBR_RS30860 at 291.720 kb on + strand, within AZOBR_RS30860 at 291.720 kb on + strand, within AZOBR_RS30860 at 291.720 kb on + strand, within AZOBR_RS30860 at 291.720 kb on + strand, within AZOBR_RS30860 at 291.721 kb on - strand, within AZOBR_RS30860 at 291.721 kb on - strand, within AZOBR_RS30860
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 289,360 + AZOBR_RS30850 0.79 -1.8 289,361 - AZOBR_RS30850 0.79 -0.2 289,361 - AZOBR_RS30850 0.79 -0.1 289,381 + AZOBR_RS30850 0.80 +0.4 289,381 + AZOBR_RS30850 0.80 +1.9 289,381 + AZOBR_RS30850 0.80 -0.2 289,381 + AZOBR_RS30850 0.80 +0.5 289,381 + AZOBR_RS30850 0.80 -0.2 289,381 + AZOBR_RS30850 0.80 -0.1 289,382 - AZOBR_RS30850 0.80 -0.5 289,382 - AZOBR_RS30850 0.80 -1.5 289,384 + AZOBR_RS30850 0.80 -1.1 289,523 - AZOBR_RS30850 0.85 -0.0 289,804 + -0.4 289,805 - -2.1 289,805 - +0.7 289,943 - +0.5 289,943 - +0.6 289,943 - -1.4 290,127 + -1.7 290,429 + AZOBR_RS30855 0.33 -0.4 290,429 + AZOBR_RS30855 0.33 -0.9 290,430 - AZOBR_RS30855 0.33 -0.4 290,430 - AZOBR_RS30855 0.33 -2.3 290,802 + +0.6 290,802 + +0.6 290,803 - -1.4 290,803 - -1.2 291,061 - AZOBR_RS30860 0.14 +0.6 291,321 + AZOBR_RS30860 0.25 -0.8 291,427 - AZOBR_RS30860 0.30 -0.3 291,720 + AZOBR_RS30860 0.43 +0.2 291,720 + AZOBR_RS30860 0.43 -0.7 291,720 + AZOBR_RS30860 0.43 -0.1 291,720 + AZOBR_RS30860 0.43 -1.9 291,721 - AZOBR_RS30860 0.43 +0.3 291,721 - AZOBR_RS30860 0.43 -1.3
Or see this region's nucleotide sequence