Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30820

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30815 and AZOBR_RS30820 are separated by 163 nucleotides AZOBR_RS30815: AZOBR_RS30815 - iron dicitrate transport regulator FecR, at 274,358 to 275,365 _RS30815 AZOBR_RS30820: AZOBR_RS30820 - TonB-dependent receptor, at 275,529 to 277,793 _RS30820 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 274.880 kb on + strand, within AZOBR_RS30815at 274.880 kb on + strand, within AZOBR_RS30815at 275.153 kb on + strand, within AZOBR_RS30815at 275.153 kb on + strand, within AZOBR_RS30815at 275.204 kb on + strand, within AZOBR_RS30815at 275.205 kb on - strand, within AZOBR_RS30815at 275.268 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.742 kb on + strandat 276.075 kb on + strand, within AZOBR_RS30820at 276.075 kb on + strand, within AZOBR_RS30820at 276.076 kb on - strand, within AZOBR_RS30820at 276.076 kb on - strand, within AZOBR_RS30820at 276.408 kb on + strand, within AZOBR_RS30820at 276.409 kb on - strand, within AZOBR_RS30820at 276.534 kb on + strand, within AZOBR_RS30820at 276.534 kb on + strand, within AZOBR_RS30820at 276.535 kb on - strand, within AZOBR_RS30820at 276.547 kb on - strand, within AZOBR_RS30820at 276.647 kb on + strand, within AZOBR_RS30820at 276.647 kb on + strand, within AZOBR_RS30820at 276.648 kb on - strand, within AZOBR_RS30820at 276.648 kb on - strand, within AZOBR_RS30820at 276.711 kb on + strand, within AZOBR_RS30820at 276.712 kb on + strand, within AZOBR_RS30820at 276.712 kb on - strand, within AZOBR_RS30820at 276.780 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.874 kb on - strand, within AZOBR_RS30820at 276.874 kb on - strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.179 kb on + strand, within AZOBR_RS30820at 277.209 kb on + strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.372 kb on - strand, within AZOBR_RS30820at 277.462 kb on - strand, within AZOBR_RS30820at 277.564 kb on - strand, within AZOBR_RS30820at 277.714 kb on - strandat 277.714 kb on - strandat 277.746 kb on + strandat 277.746 kb on + strandat 277.875 kb on + strandat 277.893 kb on + strandat 278.358 kb on + strandat 278.375 kb on + strandat 278.607 kb on + strandat 278.607 kb on + strandat 278.608 kb on - strandat 278.610 kb on + strandat 278.610 kb on + strandat 278.610 kb on + strandat 278.611 kb on - strandat 278.688 kb on - strandat 278.689 kb on + strandat 278.707 kb on + strandat 278.707 kb on + strandat 278.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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274,880 + AZOBR_RS30815 0.52 -2.4
274,880 + AZOBR_RS30815 0.52 +0.3
275,153 + AZOBR_RS30815 0.79 -0.5
275,153 + AZOBR_RS30815 0.79 -4.0
275,204 + AZOBR_RS30815 0.84 +0.7
275,205 - AZOBR_RS30815 0.84 -0.1
275,268 - -3.5
275,444 - +0.2
275,444 - -2.4
275,444 - +2.4
275,444 - +0.4
275,444 - -0.7
275,742 + -0.9
276,075 + AZOBR_RS30820 0.24 +0.4
276,075 + AZOBR_RS30820 0.24 +3.0
276,076 - AZOBR_RS30820 0.24 -0.0
276,076 - AZOBR_RS30820 0.24 -0.2
276,408 + AZOBR_RS30820 0.39 +0.3
276,409 - AZOBR_RS30820 0.39 +1.2
276,534 + AZOBR_RS30820 0.44 +1.1
276,534 + AZOBR_RS30820 0.44 -1.6
276,535 - AZOBR_RS30820 0.44 -2.4
276,547 - AZOBR_RS30820 0.45 -0.0
276,647 + AZOBR_RS30820 0.49 +0.5
276,647 + AZOBR_RS30820 0.49 +0.0
276,648 - AZOBR_RS30820 0.49 +1.1
276,648 - AZOBR_RS30820 0.49 -0.3
276,711 + AZOBR_RS30820 0.52 -1.2
276,712 + AZOBR_RS30820 0.52 +0.5
276,712 - AZOBR_RS30820 0.52 -0.8
276,780 + AZOBR_RS30820 0.55 +1.0
276,873 + AZOBR_RS30820 0.59 -1.4
276,873 + AZOBR_RS30820 0.59 -0.3
276,873 + AZOBR_RS30820 0.59 +0.1
276,873 + AZOBR_RS30820 0.59 +0.1
276,873 + AZOBR_RS30820 0.59 +0.3
276,874 - AZOBR_RS30820 0.59 +0.5
276,874 - AZOBR_RS30820 0.59 +1.4
277,155 + AZOBR_RS30820 0.72 -0.9
277,155 + AZOBR_RS30820 0.72 -0.8
277,155 + AZOBR_RS30820 0.72 +0.1
277,156 - AZOBR_RS30820 0.72 -0.7
277,156 - AZOBR_RS30820 0.72 +0.4
277,156 - AZOBR_RS30820 0.72 -2.2
277,156 - AZOBR_RS30820 0.72 -0.4
277,179 + AZOBR_RS30820 0.73 +0.5
277,209 + AZOBR_RS30820 0.74 +0.7
277,210 - AZOBR_RS30820 0.74 -0.8
277,210 - AZOBR_RS30820 0.74 +0.4
277,210 - AZOBR_RS30820 0.74 -0.6
277,372 - AZOBR_RS30820 0.81 +0.4
277,462 - AZOBR_RS30820 0.85 +1.2
277,564 - AZOBR_RS30820 0.90 +0.7
277,714 - +0.1
277,714 - -0.8
277,746 + +0.1
277,746 + -0.2
277,875 + +1.0
277,893 + -1.8
278,358 + +0.4
278,375 + +0.6
278,607 + -1.3
278,607 + -0.4
278,608 - +0.4
278,610 + +0.4
278,610 + -0.6
278,610 + -0.8
278,611 - +2.0
278,688 - -0.1
278,689 + +0.3
278,707 + +0.5
278,707 + -1.8
278,708 - +0.7

Or see this region's nucleotide sequence