Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27625 and AZOBR_RS27630 overlap by 4 nucleotides AZOBR_RS27630 and AZOBR_RS27635 overlap by 1 nucleotides AZOBR_RS27635 and AZOBR_RS27640 are separated by 66 nucleotides
AZOBR_RS27625: AZOBR_RS27625 - hypothetical protein, at 360,515 to 361,201
_RS27625
AZOBR_RS27630: AZOBR_RS27630 - CoA-transferase, at 361,198 to 362,391
_RS27630
AZOBR_RS27635: AZOBR_RS27635 - enoyl-CoA hydratase, at 362,391 to 363,212
_RS27635
AZOBR_RS27640: AZOBR_RS27640 - ABC transporter substrate-binding protein, at 363,279 to 364,250
_RS27640
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 360.398 kb on + strand at 360.399 kb on - strand at 360.515 kb on - strand at 360.981 kb on - strand, within AZOBR_RS27625 at 361.894 kb on + strand, within AZOBR_RS27630 at 362.152 kb on + strand, within AZOBR_RS27630 at 362.153 kb on - strand, within AZOBR_RS27630 at 362.153 kb on - strand, within AZOBR_RS27630 at 363.013 kb on - strand, within AZOBR_RS27635 at 363.013 kb on - strand, within AZOBR_RS27635 at 363.013 kb on - strand, within AZOBR_RS27635 at 363.210 kb on + strand at 363.211 kb on - strand at 363.246 kb on + strand at 363.246 kb on + strand at 363.246 kb on + strand at 363.247 kb on - strand at 363.391 kb on - strand, within AZOBR_RS27640 at 363.391 kb on - strand, within AZOBR_RS27640
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 360,398 + +0.8 360,399 - -0.1 360,515 - +2.3 360,981 - AZOBR_RS27625 0.68 +1.3 361,894 + AZOBR_RS27630 0.58 +3.3 362,152 + AZOBR_RS27630 0.80 -0.8 362,153 - AZOBR_RS27630 0.80 +1.3 362,153 - AZOBR_RS27630 0.80 +1.9 363,013 - AZOBR_RS27635 0.76 -1.1 363,013 - AZOBR_RS27635 0.76 -2.1 363,013 - AZOBR_RS27635 0.76 +1.0 363,210 + +0.3 363,211 - +1.2 363,246 + +0.3 363,246 + -1.2 363,246 + -1.2 363,247 - +1.6 363,391 - AZOBR_RS27640 0.12 -0.9 363,391 - AZOBR_RS27640 0.12 +1.3
Or see this region's nucleotide sequence