Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25925 and AZOBR_RS25930 are separated by 15 nucleotides AZOBR_RS25930 and AZOBR_RS25935 are separated by 22 nucleotides AZOBR_RS25935 and AZOBR_RS25940 are separated by 163 nucleotides
AZOBR_RS25925: AZOBR_RS25925 - type II citrate synthase, at 870,144 to 871,427
_RS25925
AZOBR_RS25930: AZOBR_RS25930 - aldose 1-epimerase, at 871,443 to 872,306
_RS25930
AZOBR_RS25935: AZOBR_RS25935 - antibiotic resistance protein, at 872,329 to 872,976
_RS25935
AZOBR_RS25940: AZOBR_RS25940 - regulator, at 873,140 to 873,547
_RS25940
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 870.462 kb on + strand, within AZOBR_RS25925 at 870.462 kb on + strand, within AZOBR_RS25925 at 870.463 kb on - strand, within AZOBR_RS25925 at 870.499 kb on - strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.571 kb on - strand, within AZOBR_RS25925 at 870.663 kb on + strand, within AZOBR_RS25925 at 870.694 kb on - strand, within AZOBR_RS25925 at 870.715 kb on - strand, within AZOBR_RS25925 at 870.732 kb on + strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 871.068 kb on + strand, within AZOBR_RS25925 at 871.068 kb on + strand, within AZOBR_RS25925 at 871.104 kb on + strand, within AZOBR_RS25925 at 871.104 kb on + strand, within AZOBR_RS25925 at 871.105 kb on - strand, within AZOBR_RS25925 at 871.191 kb on + strand, within AZOBR_RS25925 at 871.192 kb on - strand, within AZOBR_RS25925 at 871.192 kb on - strand, within AZOBR_RS25925 at 871.213 kb on - strand, within AZOBR_RS25925 at 871.213 kb on - strand, within AZOBR_RS25925 at 871.231 kb on - strand, within AZOBR_RS25925 at 871.377 kb on + strand at 871.444 kb on + strand at 871.445 kb on - strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 872.343 kb on - strand at 872.789 kb on + strand, within AZOBR_RS25935 at 873.093 kb on - strand at 873.093 kb on - strand at 873.093 kb on - strand at 873.094 kb on + strand at 873.202 kb on - strand, within AZOBR_RS25940 at 873.205 kb on - strand, within AZOBR_RS25940
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 870,462 + AZOBR_RS25925 0.25 -0.2 870,462 + AZOBR_RS25925 0.25 +1.1 870,463 - AZOBR_RS25925 0.25 -1.1 870,499 - AZOBR_RS25925 0.28 +0.3 870,570 + AZOBR_RS25925 0.33 -0.1 870,570 + AZOBR_RS25925 0.33 -0.0 870,570 + AZOBR_RS25925 0.33 -0.4 870,571 - AZOBR_RS25925 0.33 +1.2 870,663 + AZOBR_RS25925 0.40 +1.4 870,694 - AZOBR_RS25925 0.43 +0.2 870,715 - AZOBR_RS25925 0.44 -0.9 870,732 + AZOBR_RS25925 0.46 +0.6 870,733 - AZOBR_RS25925 0.46 -0.4 870,733 - AZOBR_RS25925 0.46 +0.8 870,733 - AZOBR_RS25925 0.46 +0.0 870,733 - AZOBR_RS25925 0.46 -1.0 871,068 + AZOBR_RS25925 0.72 +0.3 871,068 + AZOBR_RS25925 0.72 -2.2 871,104 + AZOBR_RS25925 0.75 +0.2 871,104 + AZOBR_RS25925 0.75 -1.1 871,105 - AZOBR_RS25925 0.75 -0.5 871,191 + AZOBR_RS25925 0.82 +1.6 871,192 - AZOBR_RS25925 0.82 -0.6 871,192 - AZOBR_RS25925 0.82 +0.5 871,213 - AZOBR_RS25925 0.83 +0.3 871,213 - AZOBR_RS25925 0.83 -2.0 871,231 - AZOBR_RS25925 0.85 +0.3 871,377 + +0.4 871,444 + -0.3 871,445 - +1.5 871,466 + -1.5 871,466 + +1.6 871,466 + +0.6 871,466 + -1.1 871,466 + +0.1 871,466 + -0.6 871,466 + -0.2 871,466 + +0.6 871,466 + +0.1 871,467 - -2.4 871,467 - -1.3 871,467 - +0.9 871,467 - -0.6 871,467 - +1.2 872,343 - +2.6 872,789 + AZOBR_RS25935 0.71 +0.3 873,093 - +0.7 873,093 - -2.3 873,093 - -3.7 873,094 + +1.8 873,202 - AZOBR_RS25940 0.15 +0.9 873,205 - AZOBR_RS25940 0.16 +0.1
Or see this region's nucleotide sequence