Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24500 and AZOBR_RS24505 are separated by 102 nucleotides AZOBR_RS24505 and AZOBR_RS24510 are separated by 22 nucleotides
AZOBR_RS24500: AZOBR_RS24500 - N(5) N(10)-methenyltetrahydromethanopterin cyclohydrolase, at 556,557 to 557,546
_RS24500
AZOBR_RS24505: AZOBR_RS24505 - hypothetical protein, at 557,649 to 558,743
_RS24505
AZOBR_RS24510: AZOBR_RS24510 - methylenetetrahydromethanopterin dehydrogenase, at 558,766 to 559,662
_RS24510
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 557.242 kb on + strand, within AZOBR_RS24500 at 557.243 kb on - strand, within AZOBR_RS24500 at 557.442 kb on + strand, within AZOBR_RS24500 at 557.442 kb on + strand, within AZOBR_RS24500 at 557.549 kb on + strand at 557.851 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.269 kb on - strand, within AZOBR_RS24505 at 558.346 kb on + strand, within AZOBR_RS24505 at 558.347 kb on - strand, within AZOBR_RS24505 at 559.235 kb on - strand, within AZOBR_RS24510 at 559.559 kb on + strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 556,684 + AZOBR_RS24500 0.13 +1.4 556,684 + AZOBR_RS24500 0.13 -0.2 556,684 + AZOBR_RS24500 0.13 +0.2 556,685 - AZOBR_RS24500 0.13 -0.1 556,685 - AZOBR_RS24500 0.13 -2.6 556,685 - AZOBR_RS24500 0.13 -1.6 556,685 - AZOBR_RS24500 0.13 +0.6 557,242 + AZOBR_RS24500 0.69 +0.8 557,243 - AZOBR_RS24500 0.69 -1.4 557,442 + AZOBR_RS24500 0.89 +0.3 557,442 + AZOBR_RS24500 0.89 -0.6 557,549 + -1.5 557,851 + AZOBR_RS24505 0.18 -0.6 558,081 + AZOBR_RS24505 0.39 +0.1 558,081 + AZOBR_RS24505 0.39 +0.9 558,082 - AZOBR_RS24505 0.40 +0.9 558,082 - AZOBR_RS24505 0.40 +0.6 558,082 - AZOBR_RS24505 0.40 -0.6 558,082 - AZOBR_RS24505 0.40 -2.5 558,269 - AZOBR_RS24505 0.57 +0.8 558,346 + AZOBR_RS24505 0.64 -0.8 558,347 - AZOBR_RS24505 0.64 +1.3 559,235 - AZOBR_RS24510 0.52 +0.7 559,559 + AZOBR_RS24510 0.88 -0.6 559,560 - AZOBR_RS24510 0.89 -0.8 559,560 - AZOBR_RS24510 0.89 -1.3 559,560 - AZOBR_RS24510 0.89 +0.7 559,560 - AZOBR_RS24510 0.89 -1.2 559,560 - AZOBR_RS24510 0.89 +2.3 559,649 + -1.5 559,649 + +1.1 559,649 + +0.4 559,649 + -0.5 559,650 - +0.1 559,650 - -0.2 559,650 - -1.5 559,650 - -0.3
Or see this region's nucleotide sequence