Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23800 and AZOBR_RS23805 are separated by 10 nucleotides AZOBR_RS23805 and AZOBR_RS23810 are separated by 111 nucleotides
AZOBR_RS23800: AZOBR_RS23800 - 2-keto-4-methylthiobutyrate aminotransferase, at 370,928 to 371,740
_RS23800
AZOBR_RS23805: AZOBR_RS23805 - hypothetical protein, at 371,751 to 372,212
_RS23805
AZOBR_RS23810: AZOBR_RS23810 - protease, at 372,324 to 373,409
_RS23810
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 371.372 kb on + strand, within AZOBR_RS23800 at 371.372 kb on + strand, within AZOBR_RS23800 at 371.373 kb on - strand, within AZOBR_RS23800 at 371.764 kb on + strand at 371.765 kb on - strand at 371.765 kb on - strand at 371.896 kb on + strand, within AZOBR_RS23805 at 371.897 kb on - strand, within AZOBR_RS23805 at 371.897 kb on - strand, within AZOBR_RS23805 at 372.256 kb on + strand at 372.257 kb on - strand at 372.729 kb on - strand, within AZOBR_RS23810 at 372.775 kb on + strand, within AZOBR_RS23810 at 372.775 kb on + strand, within AZOBR_RS23810 at 372.886 kb on + strand, within AZOBR_RS23810 at 372.886 kb on + strand, within AZOBR_RS23810 at 372.886 kb on + strand, within AZOBR_RS23810 at 372.887 kb on - strand, within AZOBR_RS23810 at 372.887 kb on - strand, within AZOBR_RS23810 at 372.887 kb on - strand, within AZOBR_RS23810 at 372.887 kb on - strand, within AZOBR_RS23810
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 371,372 + AZOBR_RS23800 0.55 +0.4 371,372 + AZOBR_RS23800 0.55 +0.2 371,373 - AZOBR_RS23800 0.55 -3.7 371,764 + -0.9 371,765 - +0.8 371,765 - -0.3 371,896 + AZOBR_RS23805 0.31 -2.6 371,897 - AZOBR_RS23805 0.32 +0.3 371,897 - AZOBR_RS23805 0.32 -1.9 372,256 + -0.9 372,257 - -1.4 372,729 - AZOBR_RS23810 0.37 +0.7 372,775 + AZOBR_RS23810 0.42 -0.3 372,775 + AZOBR_RS23810 0.42 -0.5 372,886 + AZOBR_RS23810 0.52 +0.6 372,886 + AZOBR_RS23810 0.52 +0.2 372,886 + AZOBR_RS23810 0.52 +0.7 372,887 - AZOBR_RS23810 0.52 -0.1 372,887 - AZOBR_RS23810 0.52 +0.4 372,887 - AZOBR_RS23810 0.52 +0.2 372,887 - AZOBR_RS23810 0.52 +0.1
Or see this region's nucleotide sequence