Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21155

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21150 and AZOBR_RS21155 are separated by 111 nucleotidesAZOBR_RS21155 and AZOBR_RS21160 are separated by 232 nucleotidesAZOBR_RS21160 and AZOBR_RS21165 are separated by 4 nucleotides AZOBR_RS21150: AZOBR_RS21150 - N-acetylglucosaminyltransferase, at 1,527,494 to 1,529,161 _RS21150 AZOBR_RS21155: AZOBR_RS21155 - hypothetical protein, at 1,529,273 to 1,529,974 _RS21155 AZOBR_RS21160: AZOBR_RS21160 - hypothetical protein, at 1,530,207 to 1,530,782 _RS21160 AZOBR_RS21165: AZOBR_RS21165 - paraquat-inducible protein A, at 1,530,787 to 1,531,419 _RS21165 Position (kb) 1529 1530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1528.826 kb on + strand, within AZOBR_RS21150at 1529.463 kb on + strand, within AZOBR_RS21155at 1529.658 kb on - strand, within AZOBR_RS21155at 1529.690 kb on + strand, within AZOBR_RS21155at 1529.691 kb on - strand, within AZOBR_RS21155at 1529.765 kb on + strand, within AZOBR_RS21155at 1529.765 kb on + strand, within AZOBR_RS21155at 1529.792 kb on + strand, within AZOBR_RS21155at 1529.793 kb on - strand, within AZOBR_RS21155at 1529.793 kb on - strand, within AZOBR_RS21155at 1529.805 kb on - strand, within AZOBR_RS21155at 1530.135 kb on - strandat 1530.486 kb on + strand, within AZOBR_RS21160at 1530.487 kb on - strand, within AZOBR_RS21160at 1530.487 kb on - strand, within AZOBR_RS21160at 1530.487 kb on - strand, within AZOBR_RS21160at 1530.613 kb on - strand, within AZOBR_RS21160at 1530.613 kb on - strand, within AZOBR_RS21160at 1530.940 kb on + strand, within AZOBR_RS21165at 1530.940 kb on + strand, within AZOBR_RS21165at 1530.940 kb on + strand, within AZOBR_RS21165at 1530.941 kb on - strand, within AZOBR_RS21165at 1530.941 kb on - strand, within AZOBR_RS21165at 1530.941 kb on - strand, within AZOBR_RS21165

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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1,528,826 + AZOBR_RS21150 0.80 -0.1
1,529,463 + AZOBR_RS21155 0.27 +0.6
1,529,658 - AZOBR_RS21155 0.55 +0.4
1,529,690 + AZOBR_RS21155 0.59 -1.8
1,529,691 - AZOBR_RS21155 0.60 -0.5
1,529,765 + AZOBR_RS21155 0.70 -0.5
1,529,765 + AZOBR_RS21155 0.70 -3.1
1,529,792 + AZOBR_RS21155 0.74 +0.2
1,529,793 - AZOBR_RS21155 0.74 -2.5
1,529,793 - AZOBR_RS21155 0.74 -1.3
1,529,805 - AZOBR_RS21155 0.76 +0.3
1,530,135 - +2.7
1,530,486 + AZOBR_RS21160 0.48 +0.3
1,530,487 - AZOBR_RS21160 0.49 -0.9
1,530,487 - AZOBR_RS21160 0.49 +1.7
1,530,487 - AZOBR_RS21160 0.49 -1.3
1,530,613 - AZOBR_RS21160 0.70 -0.5
1,530,613 - AZOBR_RS21160 0.70 -0.4
1,530,940 + AZOBR_RS21165 0.24 -0.4
1,530,940 + AZOBR_RS21165 0.24 +0.1
1,530,940 + AZOBR_RS21165 0.24 -0.3
1,530,941 - AZOBR_RS21165 0.24 -0.4
1,530,941 - AZOBR_RS21165 0.24 +0.5
1,530,941 - AZOBR_RS21165 0.24 -0.0

Or see this region's nucleotide sequence