Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21055

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21050 and AZOBR_RS21055 are separated by 233 nucleotidesAZOBR_RS21055 and AZOBR_RS21060 are separated by 46 nucleotidesAZOBR_RS21060 and AZOBR_RS21065 are separated by 79 nucleotides AZOBR_RS21050: AZOBR_RS21050 - nitrate ABC transporter ATP-binding protein, at 1,482,319 to 1,483,161 _RS21050 AZOBR_RS21055: AZOBR_RS21055 - GntR family transcriptional regulator, at 1,483,395 to 1,484,099 _RS21055 AZOBR_RS21060: AZOBR_RS21060 - membrane protein, at 1,484,146 to 1,484,544 _RS21060 AZOBR_RS21065: AZOBR_RS21065 - amidohydrolase, at 1,484,624 to 1,485,871 _RS21065 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1at 1484.070 kb on - strandat 1484.089 kb on - strandat 1484.098 kb on - strandat 1484.098 kb on - strandat 1484.243 kb on + strand, within AZOBR_RS21060at 1484.244 kb on - strand, within AZOBR_RS21060at 1484.292 kb on - strand, within AZOBR_RS21060at 1484.304 kb on - strand, within AZOBR_RS21060at 1484.369 kb on + strand, within AZOBR_RS21060at 1484.370 kb on - strand, within AZOBR_RS21060at 1484.936 kb on + strand, within AZOBR_RS21065at 1484.936 kb on + strand, within AZOBR_RS21065at 1484.936 kb on + strand, within AZOBR_RS21065at 1484.937 kb on - strand, within AZOBR_RS21065at 1484.937 kb on - strand, within AZOBR_RS21065at 1484.937 kb on - strand, within AZOBR_RS21065at 1484.989 kb on + strand, within AZOBR_RS21065at 1484.990 kb on - strand, within AZOBR_RS21065at 1484.990 kb on - strand, within AZOBR_RS21065at 1484.990 kb on - strand, within AZOBR_RS21065at 1485.065 kb on + strand, within AZOBR_RS21065

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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1,484,070 - +1.2
1,484,089 - +0.8
1,484,098 - -0.5
1,484,098 - +0.8
1,484,243 + AZOBR_RS21060 0.24 -0.1
1,484,244 - AZOBR_RS21060 0.25 -0.8
1,484,292 - AZOBR_RS21060 0.37 -0.5
1,484,304 - AZOBR_RS21060 0.40 +0.8
1,484,369 + AZOBR_RS21060 0.56 -0.8
1,484,370 - AZOBR_RS21060 0.56 +0.1
1,484,936 + AZOBR_RS21065 0.25 +0.9
1,484,936 + AZOBR_RS21065 0.25 -1.2
1,484,936 + AZOBR_RS21065 0.25 -0.8
1,484,937 - AZOBR_RS21065 0.25 -0.1
1,484,937 - AZOBR_RS21065 0.25 -0.3
1,484,937 - AZOBR_RS21065 0.25 +0.7
1,484,989 + AZOBR_RS21065 0.29 +0.2
1,484,990 - AZOBR_RS21065 0.29 -0.0
1,484,990 - AZOBR_RS21065 0.29 +0.4
1,484,990 - AZOBR_RS21065 0.29 +0.6
1,485,065 + AZOBR_RS21065 0.35 -2.4

Or see this region's nucleotide sequence