Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18195 and AZOBR_RS18200 are separated by 100 nucleotides AZOBR_RS18200 and AZOBR_RS18205 are separated by 230 nucleotides
AZOBR_RS18195: AZOBR_RS18195 - hypothetical protein, at 840,290 to 843,593
_RS18195
AZOBR_RS18200: AZOBR_RS18200 - hypothetical protein, at 843,694 to 846,412
_RS18200
AZOBR_RS18205: AZOBR_RS18205 - outer membrane efflux protein, at 846,643 to 847,959
_RS18205
Position (kb) 843
844
845
846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.879 kb on + strand, within AZOBR_RS18195 at 842.880 kb on - strand, within AZOBR_RS18195 at 843.342 kb on - strand at 843.342 kb on - strand at 844.058 kb on + strand, within AZOBR_RS18200 at 844.059 kb on - strand, within AZOBR_RS18200 at 844.581 kb on - strand, within AZOBR_RS18200 at 844.595 kb on + strand, within AZOBR_RS18200 at 844.595 kb on + strand, within AZOBR_RS18200 at 844.596 kb on - strand, within AZOBR_RS18200 at 844.898 kb on + strand, within AZOBR_RS18200 at 844.898 kb on + strand, within AZOBR_RS18200 at 844.898 kb on + strand, within AZOBR_RS18200 at 844.898 kb on + strand, within AZOBR_RS18200 at 844.898 kb on + strand, within AZOBR_RS18200 at 845.004 kb on - strand, within AZOBR_RS18200 at 845.213 kb on + strand at 845.214 kb on - strand, within AZOBR_RS18200 at 845.227 kb on + strand, within AZOBR_RS18200 at 845.240 kb on - strand, within AZOBR_RS18200 at 846.464 kb on + strand at 846.489 kb on - strand at 846.505 kb on + strand at 846.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 842,879 + AZOBR_RS18195 0.78 +0.2 842,879 + AZOBR_RS18195 0.78 +0.2 842,879 + AZOBR_RS18195 0.78 -1.2 842,879 + AZOBR_RS18195 0.78 -0.9 842,879 + AZOBR_RS18195 0.78 -2.4 842,879 + AZOBR_RS18195 0.78 -1.2 842,880 - AZOBR_RS18195 0.78 -0.9 843,342 - +0.5 843,342 - +0.5 844,058 + AZOBR_RS18200 0.13 +1.3 844,059 - AZOBR_RS18200 0.13 -0.6 844,581 - AZOBR_RS18200 0.33 +1.3 844,595 + AZOBR_RS18200 0.33 -1.8 844,595 + AZOBR_RS18200 0.33 -0.3 844,596 - AZOBR_RS18200 0.33 +0.6 844,898 + AZOBR_RS18200 0.44 -0.6 844,898 + AZOBR_RS18200 0.44 -2.6 844,898 + AZOBR_RS18200 0.44 -0.0 844,898 + AZOBR_RS18200 0.44 +0.6 844,898 + AZOBR_RS18200 0.44 -0.0 845,004 - AZOBR_RS18200 0.48 +1.5 845,213 + +2.3 845,214 - AZOBR_RS18200 0.56 -2.4 845,227 + AZOBR_RS18200 0.56 -0.4 845,240 - AZOBR_RS18200 0.57 -0.3 846,464 + -1.4 846,489 - -1.5 846,505 + +0.4 846,520 - +0.3
Or see this region's nucleotide sequence