Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15890 and AZOBR_RS15895 are separated by 182 nucleotides AZOBR_RS15895 and AZOBR_RS15900 are separated by 172 nucleotides AZOBR_RS15900 and AZOBR_RS15905 are separated by 156 nucleotides
AZOBR_RS15890: AZOBR_RS15890 - DNA topoisomerase I, at 317,792 to 320,671
_RS15890
AZOBR_RS15895: AZOBR_RS15895 - hypothetical protein, at 320,854 to 321,075
_RS15895
AZOBR_RS15900: AZOBR_RS15900 - hypothetical protein, at 321,248 to 321,706
_RS15900
AZOBR_RS15905: AZOBR_RS15905 - 2-hydroxyhepta-2 4-diene-1 7-dioate isomerase, at 321,863 to 322,714
_RS15905
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 320.099 kb on + strand, within AZOBR_RS15890 at 320.285 kb on + strand, within AZOBR_RS15890 at 320.285 kb on + strand, within AZOBR_RS15890 at 320.286 kb on - strand, within AZOBR_RS15890 at 320.307 kb on - strand, within AZOBR_RS15890 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.936 kb on - strand, within AZOBR_RS15895 at 321.082 kb on - strand at 321.082 kb on - strand at 321.171 kb on + strand at 321.504 kb on + strand, within AZOBR_RS15900 at 321.504 kb on + strand, within AZOBR_RS15900 at 321.505 kb on - strand, within AZOBR_RS15900 at 321.687 kb on + strand at 321.707 kb on - strand at 321.748 kb on + strand at 321.748 kb on + strand at 321.749 kb on - strand at 321.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 320,099 + AZOBR_RS15890 0.80 -1.7 320,285 + AZOBR_RS15890 0.87 +0.6 320,285 + AZOBR_RS15890 0.87 -3.0 320,286 - AZOBR_RS15890 0.87 +2.1 320,307 - AZOBR_RS15890 0.87 -0.4 320,935 + AZOBR_RS15895 0.36 -1.6 320,935 + AZOBR_RS15895 0.36 +0.7 320,935 + AZOBR_RS15895 0.36 +0.7 320,936 - AZOBR_RS15895 0.37 -0.2 321,082 - -1.2 321,082 - -2.9 321,171 + -0.3 321,504 + AZOBR_RS15900 0.56 -2.5 321,504 + AZOBR_RS15900 0.56 +3.4 321,505 - AZOBR_RS15900 0.56 +2.1 321,687 + -1.2 321,707 - -0.1 321,748 + -0.0 321,748 + -0.6 321,749 - -0.0 321,857 - -2.3
Or see this region's nucleotide sequence