Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15705

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt AZOBR_RS15705: AZOBR_RS15705 - 2-keto-4-pentenoate hydratase, at 275,768 to 276,532 _RS15705 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 275.037 kb on + strandat 275.186 kb on + strandat 275.201 kb on + strandat 275.738 kb on + strandat 275.888 kb on + strand, within AZOBR_RS15705at 275.889 kb on - strand, within AZOBR_RS15705at 276.069 kb on - strand, within AZOBR_RS15705at 276.107 kb on + strand, within AZOBR_RS15705at 276.107 kb on + strand, within AZOBR_RS15705at 276.108 kb on - strand, within AZOBR_RS15705at 276.495 kb on - strandat 276.512 kb on + strandat 276.567 kb on - strandat 276.631 kb on + strandat 276.698 kb on - strandat 276.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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275,037 + +0.1
275,186 + +0.2
275,201 + +0.5
275,738 + +0.4
275,888 + AZOBR_RS15705 0.16 -2.6
275,889 - AZOBR_RS15705 0.16 +1.2
276,069 - AZOBR_RS15705 0.39 -0.8
276,107 + AZOBR_RS15705 0.44 +2.2
276,107 + AZOBR_RS15705 0.44 -1.7
276,108 - AZOBR_RS15705 0.44 -0.8
276,495 - -0.0
276,512 + +0.5
276,567 - +1.5
276,631 + +0.2
276,698 - +0.2
276,698 - +1.0

Or see this region's nucleotide sequence