Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14440 and AZOBR_RS14445 are separated by 301 nucleotides AZOBR_RS14445 and AZOBR_RS14450 are separated by 305 nucleotides AZOBR_RS14450 and AZOBR_RS14455 are separated by 42 nucleotides AZOBR_RS14455 and AZOBR_RS14460 overlap by 4 nucleotides
AZOBR_RS14440: AZOBR_RS14440 - ATPase AAA, at 12,985 to 14,385
_RS14440
AZOBR_RS14445: AZOBR_RS14445 - hypothetical protein, at 14,687 to 14,881
_RS14445
AZOBR_RS14450: AZOBR_RS14450 - potassium transporter TrkA, at 15,187 to 16,563
_RS14450
AZOBR_RS14455: AZOBR_RS14455 - D-amino acid aminotransferase, at 16,606 to 17,469
_RS14455
AZOBR_RS14460: AZOBR_RS14460 - HAD family hydrolase, at 17,466 to 18,164
_RS14460
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.700 kb on - strand at 14.957 kb on + strand at 15.105 kb on + strand at 15.148 kb on + strand at 15.496 kb on + strand, within AZOBR_RS14450 at 15.817 kb on + strand, within AZOBR_RS14450 at 15.952 kb on + strand, within AZOBR_RS14450 at 15.953 kb on - strand, within AZOBR_RS14450 at 16.201 kb on + strand, within AZOBR_RS14450 at 16.201 kb on + strand, within AZOBR_RS14450 at 16.201 kb on + strand at 16.201 kb on + strand, within AZOBR_RS14450 at 16.202 kb on - strand, within AZOBR_RS14450 at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.622 kb on - strand at 16.637 kb on - strand at 16.873 kb on + strand, within AZOBR_RS14455 at 16.874 kb on - strand, within AZOBR_RS14455 at 16.874 kb on - strand, within AZOBR_RS14455 at 17.443 kb on + strand at 17.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 14,700 - -3.3 14,957 + +0.6 15,105 + +0.7 15,148 + -2.6 15,496 + AZOBR_RS14450 0.22 -2.0 15,817 + AZOBR_RS14450 0.46 -0.4 15,952 + AZOBR_RS14450 0.56 -1.9 15,953 - AZOBR_RS14450 0.56 +0.3 16,201 + AZOBR_RS14450 0.74 +0.3 16,201 + AZOBR_RS14450 0.74 +0.1 16,201 + +2.1 16,201 + AZOBR_RS14450 0.74 -1.1 16,202 - AZOBR_RS14450 0.74 -1.2 16,621 + +0.0 16,621 + +0.1 16,621 + -0.3 16,621 + -0.3 16,621 + -1.1 16,622 - -0.0 16,637 - -0.8 16,873 + AZOBR_RS14455 0.31 +1.4 16,874 - AZOBR_RS14455 0.31 -1.6 16,874 - AZOBR_RS14455 0.31 +2.4 17,443 + -0.1 17,524 - -0.4
Or see this region's nucleotide sequence