Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08825 and AZOBR_RS08830 are separated by 400 nucleotides AZOBR_RS08830 and AZOBR_RS08835 overlap by 4 nucleotides AZOBR_RS08835 and AZOBR_RS08840 overlap by 4 nucleotides
AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315
_RS08825
AZOBR_RS08830: AZOBR_RS08830 - putrescine/spermidine ABC transporter permease, at 1,847,716 to 1,848,549
_RS08830
AZOBR_RS08835: AZOBR_RS08835 - putrescine/spermidine ABC transporter permease, at 1,848,546 to 1,849,469
_RS08835
AZOBR_RS08840: AZOBR_RS08840 - ABC transporter ATP-binding protein, at 1,849,466 to 1,850,629
_RS08840
Position (kb) 1847
1848
1849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1846.963 kb on + strand, within AZOBR_RS08825 at 1847.573 kb on + strand at 1847.682 kb on + strand at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.468 kb on - strand at 1848.494 kb on + strand at 1848.494 kb on + strand at 1848.495 kb on - strand at 1848.495 kb on - strand at 1848.506 kb on + strand at 1848.916 kb on + strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1849.045 kb on + strand, within AZOBR_RS08835 at 1849.046 kb on - strand, within AZOBR_RS08835 at 1849.136 kb on - strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.217 kb on - strand, within AZOBR_RS08835 at 1849.243 kb on + strand, within AZOBR_RS08835
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,846,963 + AZOBR_RS08825 0.65 +0.4 1,847,573 + +0.5 1,847,682 + -0.0 1,848,104 + AZOBR_RS08830 0.47 +1.9 1,848,104 + AZOBR_RS08830 0.47 -1.0 1,848,105 - AZOBR_RS08830 0.47 -2.9 1,848,105 - AZOBR_RS08830 0.47 -0.3 1,848,105 - AZOBR_RS08830 0.47 -0.2 1,848,105 - AZOBR_RS08830 0.47 -1.3 1,848,468 - -2.7 1,848,494 + -3.8 1,848,494 + +0.3 1,848,495 - -2.2 1,848,495 - -2.0 1,848,506 + +0.4 1,848,916 + AZOBR_RS08835 0.40 -1.6 1,848,917 - AZOBR_RS08835 0.40 -0.7 1,848,917 - AZOBR_RS08835 0.40 -1.5 1,848,917 - +2.3 1,848,922 + AZOBR_RS08835 0.41 +0.5 1,848,922 + AZOBR_RS08835 0.41 +1.8 1,848,922 + AZOBR_RS08835 0.41 -0.2 1,848,922 + AZOBR_RS08835 0.41 -0.7 1,848,922 + AZOBR_RS08835 0.41 +1.4 1,848,922 + AZOBR_RS08835 0.41 -2.4 1,848,922 + AZOBR_RS08835 0.41 -1.0 1,848,923 - AZOBR_RS08835 0.41 +0.2 1,848,923 - AZOBR_RS08835 0.41 +0.3 1,848,923 - AZOBR_RS08835 0.41 -0.7 1,848,923 - AZOBR_RS08835 0.41 -1.0 1,849,045 + AZOBR_RS08835 0.54 -1.0 1,849,046 - AZOBR_RS08835 0.54 +0.8 1,849,136 - AZOBR_RS08835 0.64 -0.1 1,849,216 + AZOBR_RS08835 0.73 +0.8 1,849,216 + AZOBR_RS08835 0.73 -0.5 1,849,216 + AZOBR_RS08835 0.73 -0.9 1,849,216 + AZOBR_RS08835 0.73 +0.1 1,849,216 + AZOBR_RS08835 0.73 +0.3 1,849,217 - AZOBR_RS08835 0.73 +0.4 1,849,243 + AZOBR_RS08835 0.75 -0.3
Or see this region's nucleotide sequence