Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06240 and AZOBR_RS06245 are separated by 5 nucleotides AZOBR_RS06245 and AZOBR_RS06250 are separated by 6 nucleotides AZOBR_RS06250 and AZOBR_RS06255 are separated by 151 nucleotides
AZOBR_RS06240: AZOBR_RS06240 - hypothetical protein, at 1,320,521 to 1,321,024
_RS06240
AZOBR_RS06245: AZOBR_RS06245 - pyrroline-5-carboxylate reductase, at 1,321,030 to 1,321,857
_RS06245
AZOBR_RS06250: AZOBR_RS06250 - membrane protein, at 1,321,864 to 1,322,346
_RS06250
AZOBR_RS06255: AZOBR_RS06255 - acyl-CoA synthetase, at 1,322,498 to 1,324,153
_RS06255
Position (kb) 1321
1322
1323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1321.579 kb on + strand, within AZOBR_RS06245 at 1321.580 kb on - strand, within AZOBR_RS06245 at 1321.856 kb on - strand at 1321.856 kb on - strand at 1321.856 kb on - strand at 1322.660 kb on + strand at 1322.999 kb on + strand, within AZOBR_RS06255 at 1322.999 kb on + strand, within AZOBR_RS06255 at 1323.000 kb on - strand, within AZOBR_RS06255 at 1323.000 kb on - strand, within AZOBR_RS06255 at 1323.033 kb on - strand, within AZOBR_RS06255 at 1323.081 kb on - strand, within AZOBR_RS06255 at 1323.119 kb on + strand, within AZOBR_RS06255 at 1323.119 kb on + strand, within AZOBR_RS06255 at 1323.119 kb on + strand, within AZOBR_RS06255 at 1323.192 kb on - strand, within AZOBR_RS06255 at 1323.302 kb on + strand, within AZOBR_RS06255 at 1323.302 kb on + strand, within AZOBR_RS06255 at 1323.302 kb on + strand, within AZOBR_RS06255 at 1323.302 kb on + strand, within AZOBR_RS06255 at 1323.303 kb on - strand, within AZOBR_RS06255 at 1323.303 kb on - strand, within AZOBR_RS06255 at 1323.303 kb on - strand, within AZOBR_RS06255 at 1323.303 kb on - strand at 1323.303 kb on - strand, within AZOBR_RS06255
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,321,579 + AZOBR_RS06245 0.66 +0.4 1,321,580 - AZOBR_RS06245 0.66 -0.2 1,321,856 - -1.2 1,321,856 - -0.7 1,321,856 - +0.4 1,322,660 + +0.5 1,322,999 + AZOBR_RS06255 0.30 +0.8 1,322,999 + AZOBR_RS06255 0.30 +0.2 1,323,000 - AZOBR_RS06255 0.30 +2.4 1,323,000 - AZOBR_RS06255 0.30 -0.4 1,323,033 - AZOBR_RS06255 0.32 -0.6 1,323,081 - AZOBR_RS06255 0.35 -1.3 1,323,119 + AZOBR_RS06255 0.38 +0.8 1,323,119 + AZOBR_RS06255 0.38 +0.7 1,323,119 + AZOBR_RS06255 0.38 -0.9 1,323,192 - AZOBR_RS06255 0.42 -2.2 1,323,302 + AZOBR_RS06255 0.49 +0.2 1,323,302 + AZOBR_RS06255 0.49 +0.2 1,323,302 + AZOBR_RS06255 0.49 +0.0 1,323,302 + AZOBR_RS06255 0.49 +1.1 1,323,303 - AZOBR_RS06255 0.49 -0.3 1,323,303 - AZOBR_RS06255 0.49 +0.5 1,323,303 - AZOBR_RS06255 0.49 -0.1 1,323,303 - -1.9 1,323,303 - AZOBR_RS06255 0.49 +0.5
Or see this region's nucleotide sequence