Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06225 and AZOBR_RS06230 are separated by 611 nucleotides AZOBR_RS06230 and AZOBR_RS06235 are separated by 100 nucleotides AZOBR_RS06235 and AZOBR_RS06240 are separated by 251 nucleotides
AZOBR_RS06225: AZOBR_RS06225 - hypothetical protein, at 1,316,853 to 1,317,311
_RS06225
AZOBR_RS06230: AZOBR_RS06230 - hypothetical protein, at 1,317,923 to 1,319,881
_RS06230
AZOBR_RS06235: AZOBR_RS06235 - hypothetical protein, at 1,319,982 to 1,320,269
_RS06235
AZOBR_RS06240: AZOBR_RS06240 - hypothetical protein, at 1,320,521 to 1,321,024
_RS06240
Position (kb)
1317
1318
1319
1320 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1317.229 kb on - strand, within AZOBR_RS06225 at 1317.637 kb on + strand at 1317.638 kb on - strand at 1317.984 kb on - strand at 1317.984 kb on - strand at 1318.707 kb on - strand, within AZOBR_RS06230 at 1319.709 kb on + strand at 1319.710 kb on - strand at 1319.997 kb on - strand at 1320.412 kb on + strand at 1320.412 kb on + strand at 1320.413 kb on - strand at 1320.674 kb on + strand, within AZOBR_RS06240
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,317,229 - AZOBR_RS06225 0.82 -0.3 1,317,637 + +0.3 1,317,638 - -0.0 1,317,984 - -0.1 1,317,984 - +2.3 1,318,707 - AZOBR_RS06230 0.40 -1.2 1,319,709 + -3.3 1,319,710 - +0.6 1,319,997 - -0.0 1,320,412 + +0.1 1,320,412 + +0.2 1,320,413 - +0.7 1,320,674 + AZOBR_RS06240 0.30 +1.1
Or see this region's nucleotide sequence