Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01895 and AZOBR_RS01900 are separated by 120 nucleotides AZOBR_RS01900 and AZOBR_RS01905 overlap by 4 nucleotides AZOBR_RS01905 and AZOBR_RS01910 are separated by 141 nucleotides
AZOBR_RS01895: AZOBR_RS01895 - transcriptional regulator, at 386,456 to 387,145
_RS01895
AZOBR_RS01900: AZOBR_RS01900 - membrane protein, at 387,266 to 387,706
_RS01900
AZOBR_RS01905: AZOBR_RS01905 - sorbosone dehydrogenase, at 387,703 to 388,983
_RS01905
AZOBR_RS01910: AZOBR_RS01910 - hypothetical protein, at 389,125 to 389,823
_RS01910
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 387.270 kb on + strand at 387.271 kb on - strand at 387.522 kb on - strand, within AZOBR_RS01900 at 387.790 kb on + strand at 387.790 kb on + strand at 387.790 kb on + strand at 388.187 kb on - strand, within AZOBR_RS01905 at 388.187 kb on - strand, within AZOBR_RS01905 at 388.187 kb on - strand, within AZOBR_RS01905 at 388.187 kb on - strand, within AZOBR_RS01905 at 388.282 kb on + strand, within AZOBR_RS01905 at 388.282 kb on + strand, within AZOBR_RS01905 at 388.282 kb on + strand, within AZOBR_RS01905 at 388.283 kb on - strand, within AZOBR_RS01905 at 388.283 kb on - strand, within AZOBR_RS01905 at 388.339 kb on + strand, within AZOBR_RS01905 at 388.339 kb on + strand, within AZOBR_RS01905 at 388.340 kb on - strand, within AZOBR_RS01905 at 388.340 kb on - strand, within AZOBR_RS01905 at 388.447 kb on + strand, within AZOBR_RS01905 at 388.589 kb on - strand, within AZOBR_RS01905 at 388.589 kb on - strand, within AZOBR_RS01905 at 388.601 kb on - strand, within AZOBR_RS01905 at 388.606 kb on + strand, within AZOBR_RS01905 at 388.606 kb on + strand, within AZOBR_RS01905 at 388.607 kb on - strand, within AZOBR_RS01905 at 388.607 kb on - strand, within AZOBR_RS01905 at 388.682 kb on - strand, within AZOBR_RS01905 at 388.792 kb on - strand, within AZOBR_RS01905 at 388.807 kb on + strand, within AZOBR_RS01905 at 388.807 kb on + strand, within AZOBR_RS01905 at 388.900 kb on + strand at 388.900 kb on + strand at 388.900 kb on + strand at 388.901 kb on - strand at 388.901 kb on - strand at 388.901 kb on - strand at 389.883 kb on + strand at 389.883 kb on + strand at 389.883 kb on + strand at 389.884 kb on - strand at 389.924 kb on + strand at 389.924 kb on + strand at 389.924 kb on + strand at 389.975 kb on + strand at 389.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 387,270 + -0.0 387,271 - -1.6 387,522 - AZOBR_RS01900 0.58 +0.2 387,790 + -1.0 387,790 + +0.5 387,790 + +0.5 388,187 - AZOBR_RS01905 0.38 +0.4 388,187 - AZOBR_RS01905 0.38 +0.5 388,187 - AZOBR_RS01905 0.38 +1.5 388,187 - AZOBR_RS01905 0.38 +0.2 388,282 + AZOBR_RS01905 0.45 +0.0 388,282 + AZOBR_RS01905 0.45 +1.8 388,282 + AZOBR_RS01905 0.45 +0.5 388,283 - AZOBR_RS01905 0.45 +0.5 388,283 - AZOBR_RS01905 0.45 +0.5 388,339 + AZOBR_RS01905 0.50 +0.7 388,339 + AZOBR_RS01905 0.50 -0.3 388,340 - AZOBR_RS01905 0.50 +0.7 388,340 - AZOBR_RS01905 0.50 -1.2 388,447 + AZOBR_RS01905 0.58 +1.1 388,589 - AZOBR_RS01905 0.69 +0.5 388,589 - AZOBR_RS01905 0.69 -0.5 388,601 - AZOBR_RS01905 0.70 -0.8 388,606 + AZOBR_RS01905 0.70 +0.9 388,606 + AZOBR_RS01905 0.70 +0.9 388,607 - AZOBR_RS01905 0.71 +2.5 388,607 - AZOBR_RS01905 0.71 -2.4 388,682 - AZOBR_RS01905 0.76 +0.5 388,792 - AZOBR_RS01905 0.85 +0.4 388,807 + AZOBR_RS01905 0.86 +3.2 388,807 + AZOBR_RS01905 0.86 -0.3 388,900 + +0.3 388,900 + +2.5 388,900 + +0.0 388,901 - +1.0 388,901 - +0.8 388,901 - -1.2 389,883 + -0.5 389,883 + +0.5 389,883 + +0.3 389,884 - -1.4 389,924 + -0.4 389,924 + +0.5 389,924 + -3.9 389,975 + +1.3 389,976 - -0.5
Or see this region's nucleotide sequence