Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01755 and AZOBR_RS01760 overlap by 4 nucleotides AZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotides AZOBR_RS01765 and AZOBR_RS01770 are separated by 9 nucleotides AZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotides
AZOBR_RS01755: AZOBR_RS01755 - hypothetical protein, at 358,189 to 359,037
_RS01755
AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642
_RS01760
AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478
_RS01765
AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132
_RS01770
AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802
_RS01775
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.849 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 361.103 kb on + strand at 361.103 kb on + strand at 361.248 kb on + strand, within AZOBR_RS01775 at 361.249 kb on - strand, within AZOBR_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 358,669 + AZOBR_RS01755 0.57 -2.9 358,669 + AZOBR_RS01755 0.57 -1.6 358,669 + AZOBR_RS01755 0.57 -1.6 358,669 + AZOBR_RS01755 0.57 -2.7 358,669 + AZOBR_RS01755 0.57 -2.5 358,849 + AZOBR_RS01755 0.78 -0.3 358,896 + AZOBR_RS01755 0.83 -2.9 358,896 + AZOBR_RS01755 0.83 -1.7 358,896 + AZOBR_RS01755 0.83 -1.6 359,472 + AZOBR_RS01760 0.72 +0.5 359,472 + AZOBR_RS01760 0.72 +0.1 359,472 + AZOBR_RS01760 0.72 +0.5 359,517 + AZOBR_RS01760 0.79 +0.9 359,517 + AZOBR_RS01760 0.79 +2.5 361,103 + -3.7 361,103 + -0.7 361,248 + AZOBR_RS01775 0.18 -1.1 361,249 - AZOBR_RS01775 0.18 -1.0
Or see this region's nucleotide sequence