Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01735 and AZOBR_RS01740 are separated by 6 nucleotides AZOBR_RS01740 and AZOBR_RS01745 are separated by 99 nucleotides AZOBR_RS01745 and AZOBR_RS01750 are separated by 48 nucleotides AZOBR_RS01750 and AZOBR_RS01755 are separated by 427 nucleotides
AZOBR_RS01735: AZOBR_RS01735 - death-on-curing protein, at 355,464 to 355,907
_RS01735
AZOBR_RS01740: AZOBR_RS01740 - AbrB family transcriptional regulator, at 355,914 to 356,138
_RS01740
AZOBR_RS01745: AZOBR_RS01745 - membrane protein, at 356,238 to 356,666
_RS01745
AZOBR_RS01750: AZOBR_RS01750 - uroporphyrinogen decarboxylase, at 356,715 to 357,761
_RS01750
AZOBR_RS01755: AZOBR_RS01755 - hypothetical protein, at 358,189 to 359,037
_RS01755
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 355.744 kb on + strand, within AZOBR_RS01735 at 355.745 kb on - strand, within AZOBR_RS01735 at 355.759 kb on + strand, within AZOBR_RS01735 at 355.877 kb on - strand at 355.916 kb on - strand at 355.987 kb on + strand, within AZOBR_RS01740 at 356.171 kb on - strand at 356.171 kb on - strand at 356.183 kb on + strand at 356.232 kb on - strand at 357.790 kb on - strand at 357.790 kb on - strand at 357.790 kb on - strand at 357.825 kb on - strand at 357.825 kb on - strand at 357.995 kb on - strand at 357.995 kb on - strand at 358.023 kb on + strand at 358.048 kb on - strand at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 355,744 + AZOBR_RS01735 0.63 -0.6 355,745 - AZOBR_RS01735 0.63 -0.3 355,759 + AZOBR_RS01735 0.66 -3.1 355,877 - +0.7 355,916 - -2.0 355,987 + AZOBR_RS01740 0.32 -0.8 356,171 - -0.4 356,171 - +0.3 356,183 + +1.4 356,232 - -0.1 357,790 - +0.6 357,790 - +0.8 357,790 - -0.9 357,825 - -0.6 357,825 - -0.9 357,995 - -0.4 357,995 - +0.4 358,023 + -0.3 358,048 - +2.8 358,669 + AZOBR_RS01755 0.57 -2.9 358,669 + AZOBR_RS01755 0.57 -1.6 358,669 + AZOBR_RS01755 0.57 -1.6 358,669 + AZOBR_RS01755 0.57 -2.7 358,669 + AZOBR_RS01755 0.57 -2.5
Or see this region's nucleotide sequence