Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01085 and AZOBR_RS01090 are separated by 106 nucleotides AZOBR_RS01090 and AZOBR_RS01095 are separated by 23 nucleotides AZOBR_RS01095 and AZOBR_RS01100 are separated by 5 nucleotides AZOBR_RS01100 and AZOBR_RS01105 are separated by 137 nucleotides
AZOBR_RS01085: AZOBR_RS01085 - hypothetical protein, at 221,047 to 221,820
_RS01085
AZOBR_RS01090: AZOBR_RS01090 - thiamine biosynthesis protein ThiF, at 221,927 to 222,715
_RS01090
AZOBR_RS01095: AZOBR_RS01095 - hypothetical protein, at 222,739 to 223,176
_RS01095
AZOBR_RS01100: AZOBR_RS01100 - hypothetical protein, at 223,182 to 223,454
_RS01100
AZOBR_RS01105: AZOBR_RS01105 - PhoB family transcriptional regulator, at 223,592 to 224,296
_RS01105
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 221.141 kb on - strand, within AZOBR_RS01085 at 221.299 kb on + strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.301 kb on + strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.348 kb on - strand, within AZOBR_RS01085 at 221.680 kb on + strand, within AZOBR_RS01085 at 221.833 kb on + strand at 221.914 kb on + strand at 222.068 kb on + strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090 at 223.452 kb on + strand at 223.453 kb on - strand at 223.453 kb on - strand at 223.453 kb on - strand at 223.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 221,141 - AZOBR_RS01085 0.12 -0.8 221,299 + AZOBR_RS01085 0.33 -0.1 221,300 - AZOBR_RS01085 0.33 +0.5 221,300 - AZOBR_RS01085 0.33 -0.5 221,300 - AZOBR_RS01085 0.33 +1.2 221,301 + AZOBR_RS01085 0.33 +2.8 221,302 - AZOBR_RS01085 0.33 +0.4 221,302 - AZOBR_RS01085 0.33 -0.7 221,348 - AZOBR_RS01085 0.39 -0.4 221,680 + AZOBR_RS01085 0.82 +2.9 221,833 + +0.1 221,914 + +0.5 222,068 + AZOBR_RS01090 0.18 +2.9 222,351 - AZOBR_RS01090 0.54 -2.0 222,351 - AZOBR_RS01090 0.54 +1.5 223,452 + +0.0 223,453 - +0.7 223,453 - +0.5 223,453 - -1.7 223,557 - +2.5
Or see this region's nucleotide sequence