Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20210

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20205 and AO356_20210 are separated by 384 nucleotidesAO356_20210 and AO356_20215 are separated by 156 nucleotides AO356_20205: AO356_20205 - hydrolase TatD, at 4,518,045 to 4,518,839 _20205 AO356_20210: AO356_20210 - TetR family transcriptional regulator, at 4,519,224 to 4,519,862 _20210 AO356_20215: AO356_20215 - radical SAM protein, at 4,520,019 to 4,520,987 _20215 Position (kb) 4519 4520Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4518.342 kb on + strand, within AO356_20205at 4518.343 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.558 kb on + strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.667 kb on - strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.716 kb on - strand, within AO356_20205at 4518.760 kb on - strandat 4518.893 kb on + strandat 4518.899 kb on + strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.926 kb on - strandat 4518.926 kb on - strandat 4518.931 kb on + strandat 4518.975 kb on + strandat 4518.975 kb on + strandat 4518.975 kb on + strandat 4518.976 kb on - strandat 4518.985 kb on + strandat 4518.985 kb on + strandat 4518.986 kb on - strandat 4519.035 kb on + strandat 4519.114 kb on + strandat 4519.118 kb on + strandat 4519.119 kb on - strandat 4519.119 kb on - strandat 4519.176 kb on + strandat 4519.177 kb on - strandat 4519.182 kb on + strandat 4519.241 kb on + strandat 4519.374 kb on + strand, within AO356_20210at 4519.374 kb on + strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.405 kb on - strand, within AO356_20210at 4519.405 kb on - strand, within AO356_20210at 4519.425 kb on + strand, within AO356_20210at 4519.426 kb on - strand, within AO356_20210at 4519.497 kb on + strand, within AO356_20210at 4519.498 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.699 kb on - strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210at 4519.897 kb on - strandat 4519.914 kb on + strandat 4519.914 kb on + strandat 4519.914 kb on + strandat 4519.914 kb on + strandat 4519.915 kb on - strandat 4519.915 kb on - strandat 4519.915 kb on - strandat 4519.915 kb on - strandat 4519.915 kb on - strandat 4519.935 kb on - strandat 4519.937 kb on + strandat 4519.937 kb on + strandat 4519.938 kb on - strandat 4519.938 kb on - strandat 4519.938 kb on - strandat 4520.085 kb on + strandat 4520.085 kb on + strandat 4520.085 kb on + strandat 4520.085 kb on + strandat 4520.086 kb on - strandat 4520.086 kb on - strandat 4520.093 kb on + strandat 4520.093 kb on + strandat 4520.094 kb on - strandat 4520.094 kb on - strandat 4520.094 kb on - strandat 4520.097 kb on + strandat 4520.097 kb on + strandat 4520.097 kb on + strandat 4520.097 kb on + strandat 4520.098 kb on - strandat 4520.098 kb on - strandat 4520.098 kb on - strandat 4520.175 kb on + strand, within AO356_20215at 4520.175 kb on + strand, within AO356_20215at 4520.176 kb on - strand, within AO356_20215at 4520.176 kb on - strand, within AO356_20215at 4520.267 kb on - strand, within AO356_20215at 4520.405 kb on + strand, within AO356_20215at 4520.557 kb on - strand, within AO356_20215at 4520.670 kb on + strand, within AO356_20215at 4520.670 kb on + strand, within AO356_20215at 4520.676 kb on + strand, within AO356_20215at 4520.676 kb on + strand, within AO356_20215at 4520.676 kb on + strand, within AO356_20215at 4520.677 kb on - strand, within AO356_20215at 4520.677 kb on - strand, within AO356_20215

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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4,518,342 + AO356_20205 0.37 +0.5
4,518,343 - AO356_20205 0.37 +0.3
4,518,349 - AO356_20205 0.38 +0.9
4,518,349 - AO356_20205 0.38 -0.0
4,518,349 - AO356_20205 0.38 +1.5
4,518,349 - AO356_20205 0.38 +0.7
4,518,558 + AO356_20205 0.65 +0.3
4,518,559 - AO356_20205 0.65 -0.5
4,518,559 - AO356_20205 0.65 +0.1
4,518,559 - AO356_20205 0.65 +1.3
4,518,559 - AO356_20205 0.65 +0.4
4,518,559 - AO356_20205 0.65 -0.5
4,518,561 + AO356_20205 0.65 -0.2
4,518,561 + AO356_20205 0.65 -0.6
4,518,561 + AO356_20205 0.65 +1.4
4,518,561 + AO356_20205 0.65 +0.5
4,518,561 + AO356_20205 0.65 -1.0
4,518,561 + AO356_20205 0.65 +1.0
4,518,561 + AO356_20205 0.65 -0.3
4,518,561 + AO356_20205 0.65 -0.7
4,518,561 + AO356_20205 0.65 +0.4
4,518,561 + AO356_20205 0.65 -0.4
4,518,562 - AO356_20205 0.65 +0.1
4,518,562 - AO356_20205 0.65 +0.3
4,518,562 - AO356_20205 0.65 +0.1
4,518,562 - AO356_20205 0.65 -0.1
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 +0.4
4,518,667 - AO356_20205 0.78 +1.0
4,518,711 + AO356_20205 0.84 -0.1
4,518,711 + AO356_20205 0.84 -0.2
4,518,711 + AO356_20205 0.84 -0.2
4,518,711 + AO356_20205 0.84 +1.9
4,518,712 - AO356_20205 0.84 -0.5
4,518,712 - AO356_20205 0.84 -0.2
4,518,712 - AO356_20205 0.84 +0.5
4,518,712 - AO356_20205 0.84 -0.7
4,518,712 - AO356_20205 0.84 -0.3
4,518,716 - AO356_20205 0.84 +1.1
4,518,760 - +0.4
4,518,893 + -0.7
4,518,899 + +1.5
4,518,900 - +0.6
4,518,900 - -0.2
4,518,900 - +0.1
4,518,900 - +0.1
4,518,926 - -0.4
4,518,926 - +0.3
4,518,931 + +0.6
4,518,975 + +0.3
4,518,975 + +0.1
4,518,975 + +1.8
4,518,976 - +0.1
4,518,985 + +0.1
4,518,985 + -0.2
4,518,986 - -0.3
4,519,035 + +0.7
4,519,114 + +1.0
4,519,118 + +0.4
4,519,119 - -0.4
4,519,119 - +0.4
4,519,176 + +0.9
4,519,177 - -0.3
4,519,182 + +0.0
4,519,241 + +0.7
4,519,374 + AO356_20210 0.23 +0.7
4,519,374 + AO356_20210 0.23 +1.1
4,519,375 - AO356_20210 0.24 +0.3
4,519,375 - AO356_20210 0.24 +0.3
4,519,375 - AO356_20210 0.24 -0.6
4,519,375 - AO356_20210 0.24 +0.1
4,519,404 + AO356_20210 0.28 +0.5
4,519,404 + AO356_20210 0.28 +0.6
4,519,404 + AO356_20210 0.28 +0.2
4,519,404 + AO356_20210 0.28 +0.5
4,519,404 + AO356_20210 0.28 -0.5
4,519,404 + AO356_20210 0.28 +0.1
4,519,405 - AO356_20210 0.28 +0.6
4,519,405 - AO356_20210 0.28 -0.2
4,519,425 + AO356_20210 0.31 +0.6
4,519,426 - AO356_20210 0.32 +0.4
4,519,497 + AO356_20210 0.43 +2.8
4,519,498 - AO356_20210 0.43 -0.1
4,519,690 - AO356_20210 0.73 +0.5
4,519,690 - AO356_20210 0.73 +0.8
4,519,690 - AO356_20210 0.73 +0.8
4,519,699 - AO356_20210 0.74 -0.3
4,519,740 + AO356_20210 0.81 +0.9
4,519,740 + AO356_20210 0.81 +0.4
4,519,740 + AO356_20210 0.81 +1.3
4,519,897 - -0.8
4,519,914 + -0.1
4,519,914 + -0.2
4,519,914 + +0.2
4,519,914 + +0.8
4,519,915 - +0.4
4,519,915 - -0.2
4,519,915 - -0.4
4,519,915 - -0.4
4,519,915 - +0.2
4,519,935 - -0.1
4,519,937 + +0.1
4,519,937 + -0.1
4,519,938 - +0.1
4,519,938 - +0.9
4,519,938 - -0.4
4,520,085 + -1.1
4,520,085 + -1.0
4,520,085 + -0.9
4,520,085 + -2.1
4,520,086 - -1.0
4,520,086 - -0.2
4,520,093 + +0.2
4,520,093 + -1.1
4,520,094 - +0.3
4,520,094 - -0.3
4,520,094 - -0.7
4,520,097 + -1.4
4,520,097 + -1.2
4,520,097 + -0.7
4,520,097 + -1.0
4,520,098 - -0.7
4,520,098 - -1.3
4,520,098 - -0.7
4,520,175 + AO356_20215 0.16 -1.2
4,520,175 + AO356_20215 0.16 -0.3
4,520,176 - AO356_20215 0.16 -1.6
4,520,176 - AO356_20215 0.16 -1.6
4,520,267 - AO356_20215 0.26 -0.9
4,520,405 + AO356_20215 0.40 -1.3
4,520,557 - AO356_20215 0.56 -0.1
4,520,670 + AO356_20215 0.67 -0.8
4,520,670 + AO356_20215 0.67 -0.4
4,520,676 + AO356_20215 0.68 -0.3
4,520,676 + AO356_20215 0.68 -0.4
4,520,676 + AO356_20215 0.68 -0.9
4,520,677 - AO356_20215 0.68 -0.8
4,520,677 - AO356_20215 0.68 -0.9

Or see this region's nucleotide sequence