Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10550

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_10545 and AO356_10550 are separated by 37 nucleotidesAO356_10550 and AO356_10555 are separated by 352 nucleotides AO356_10545: AO356_10545 - nitrate ABC transporter substrate-binding protein, at 2,383,186 to 2,384,211 _10545 AO356_10550: AO356_10550 - taurine dioxygenase, at 2,384,249 to 2,385,151 _10550 AO356_10555: AO356_10555 - hemolysin secretion protein D, at 2,385,504 to 2,386,871 _10555 Position (kb) 2384 2385 2386Strain fitness (log2 ratio) -1 0 1 2at 2383.385 kb on + strand, within AO356_10545at 2383.385 kb on + strand, within AO356_10545at 2383.385 kb on + strand, within AO356_10545at 2383.385 kb on + strand, within AO356_10545at 2383.385 kb on + strand, within AO356_10545at 2383.385 kb on + strand, within AO356_10545at 2383.386 kb on - strand, within AO356_10545at 2383.386 kb on - strand, within AO356_10545at 2383.460 kb on + strand, within AO356_10545at 2383.460 kb on + strand, within AO356_10545at 2383.460 kb on + strand, within AO356_10545at 2383.461 kb on - strand, within AO356_10545at 2383.461 kb on - strand, within AO356_10545at 2383.461 kb on - strand, within AO356_10545at 2383.535 kb on + strand, within AO356_10545at 2383.535 kb on + strand, within AO356_10545at 2383.535 kb on + strand, within AO356_10545at 2383.535 kb on + strand, within AO356_10545at 2383.536 kb on - strand, within AO356_10545at 2383.536 kb on - strand, within AO356_10545at 2383.536 kb on - strand, within AO356_10545at 2383.536 kb on - strandat 2383.546 kb on + strand, within AO356_10545at 2383.546 kb on + strand, within AO356_10545at 2383.547 kb on - strand, within AO356_10545at 2383.547 kb on - strand, within AO356_10545at 2383.673 kb on + strand, within AO356_10545at 2383.673 kb on + strand, within AO356_10545at 2383.673 kb on + strand, within AO356_10545at 2383.673 kb on + strand, within AO356_10545at 2383.673 kb on + strand, within AO356_10545at 2383.674 kb on - strand, within AO356_10545at 2383.674 kb on - strand, within AO356_10545at 2383.674 kb on - strand, within AO356_10545at 2383.674 kb on - strand, within AO356_10545at 2383.725 kb on - strand, within AO356_10545at 2383.725 kb on - strand, within AO356_10545at 2383.832 kb on + strand, within AO356_10545at 2383.832 kb on + strand, within AO356_10545at 2383.832 kb on + strand, within AO356_10545at 2383.833 kb on - strand, within AO356_10545at 2383.833 kb on - strand, within AO356_10545at 2383.833 kb on - strand, within AO356_10545at 2383.833 kb on - strand, within AO356_10545at 2383.833 kb on - strand, within AO356_10545at 2383.835 kb on + strand, within AO356_10545at 2383.835 kb on + strand, within AO356_10545at 2383.835 kb on + strand, within AO356_10545at 2384.072 kb on + strand, within AO356_10545at 2384.073 kb on - strand, within AO356_10545at 2384.283 kb on + strandat 2384.382 kb on + strand, within AO356_10550at 2384.383 kb on - strand, within AO356_10550at 2384.383 kb on - strand, within AO356_10550at 2384.383 kb on - strand, within AO356_10550at 2384.383 kb on - strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.412 kb on + strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.413 kb on - strand, within AO356_10550at 2384.622 kb on + strand, within AO356_10550at 2384.623 kb on - strand, within AO356_10550at 2384.623 kb on - strand, within AO356_10550at 2384.656 kb on + strand, within AO356_10550at 2384.657 kb on - strand, within AO356_10550at 2384.774 kb on - strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.775 kb on + strand, within AO356_10550at 2384.776 kb on - strand, within AO356_10550at 2384.776 kb on - strand, within AO356_10550at 2384.776 kb on - strand, within AO356_10550at 2384.776 kb on - strand, within AO356_10550at 2384.982 kb on + strand, within AO356_10550at 2384.982 kb on + strand, within AO356_10550at 2384.982 kb on + strand, within AO356_10550at 2384.983 kb on - strand, within AO356_10550at 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.151 kb on + strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.152 kb on - strandat 2385.225 kb on + strandat 2385.225 kb on + strandat 2385.226 kb on - strandat 2385.226 kb on - strandat 2385.226 kb on - strandat 2385.226 kb on - strandat 2385.226 kb on - strandat 2385.329 kb on + strandat 2385.329 kb on + strandat 2385.330 kb on - strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.392 kb on + strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.393 kb on - strandat 2385.505 kb on + strandat 2385.505 kb on + strandat 2385.556 kb on + strandat 2385.556 kb on + strandat 2385.557 kb on - strandat 2385.557 kb on - strandat 2385.557 kb on - strandat 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.676 kb on + strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.677 kb on - strand, within AO356_10555at 2385.679 kb on + strand, within AO356_10555at 2385.679 kb on + strand, within AO356_10555at 2385.679 kb on + strand, within AO356_10555at 2385.679 kb on + strand, within AO356_10555at 2385.679 kb on + strand, within AO356_10555at 2385.680 kb on - strand, within AO356_10555at 2385.680 kb on - strand, within AO356_10555at 2385.680 kb on - strand, within AO356_10555at 2385.680 kb on - strand, within AO356_10555at 2385.680 kb on - strand, within AO356_10555at 2385.751 kb on + strand, within AO356_10555at 2385.751 kb on + strand, within AO356_10555at 2385.751 kb on + strand, within AO356_10555at 2385.751 kb on + strand, within AO356_10555at 2385.752 kb on - strand, within AO356_10555at 2385.760 kb on + strand, within AO356_10555at 2385.760 kb on + strand, within AO356_10555at 2385.760 kb on + strand, within AO356_10555at 2385.760 kb on + strand, within AO356_10555at 2385.766 kb on + strand, within AO356_10555at 2385.926 kb on + strand, within AO356_10555at 2385.926 kb on + strand, within AO356_10555at 2385.926 kb on + strand, within AO356_10555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
2,383,385 + AO356_10545 0.19 +0.6
2,383,385 + AO356_10545 0.19 +0.0
2,383,385 + AO356_10545 0.19 -0.6
2,383,385 + AO356_10545 0.19 +0.8
2,383,385 + AO356_10545 0.19 +1.3
2,383,385 + AO356_10545 0.19 -0.2
2,383,386 - AO356_10545 0.19 +0.2
2,383,386 - AO356_10545 0.19 +0.4
2,383,460 + AO356_10545 0.27 +0.6
2,383,460 + AO356_10545 0.27 +1.5
2,383,460 + AO356_10545 0.27 +0.9
2,383,461 - AO356_10545 0.27 -0.1
2,383,461 - AO356_10545 0.27 -0.1
2,383,461 - AO356_10545 0.27 +0.8
2,383,535 + AO356_10545 0.34 +0.4
2,383,535 + AO356_10545 0.34 +0.4
2,383,535 + AO356_10545 0.34 -0.4
2,383,535 + AO356_10545 0.34 +0.8
2,383,536 - AO356_10545 0.34 -0.2
2,383,536 - AO356_10545 0.34 +0.1
2,383,536 - AO356_10545 0.34 +0.3
2,383,536 - +2.2
2,383,546 + AO356_10545 0.35 +1.3
2,383,546 + AO356_10545 0.35 +2.2
2,383,547 - AO356_10545 0.35 +0.4
2,383,547 - AO356_10545 0.35 -0.1
2,383,673 + AO356_10545 0.47 +0.1
2,383,673 + AO356_10545 0.47 +0.5
2,383,673 + AO356_10545 0.47 +0.0
2,383,673 + AO356_10545 0.47 +0.7
2,383,673 + AO356_10545 0.47 +0.2
2,383,674 - AO356_10545 0.48 +0.5
2,383,674 - AO356_10545 0.48 +1.2
2,383,674 - AO356_10545 0.48 +0.7
2,383,674 - AO356_10545 0.48 +0.1
2,383,725 - AO356_10545 0.53 +0.2
2,383,725 - AO356_10545 0.53 +0.9
2,383,832 + AO356_10545 0.63 -0.4
2,383,832 + AO356_10545 0.63 +0.6
2,383,832 + AO356_10545 0.63 +0.6
2,383,833 - AO356_10545 0.63 +0.3
2,383,833 - AO356_10545 0.63 +0.1
2,383,833 - AO356_10545 0.63 +0.8
2,383,833 - AO356_10545 0.63 +0.9
2,383,833 - AO356_10545 0.63 +0.1
2,383,835 + AO356_10545 0.63 +0.5
2,383,835 + AO356_10545 0.63 +0.2
2,383,835 + AO356_10545 0.63 -0.1
2,384,072 + AO356_10545 0.86 -0.1
2,384,073 - AO356_10545 0.86 +0.7
2,384,283 + -1.1
2,384,382 + AO356_10550 0.15 +0.1
2,384,383 - AO356_10550 0.15 -0.1
2,384,383 - AO356_10550 0.15 +0.9
2,384,383 - AO356_10550 0.15 -0.3
2,384,383 - AO356_10550 0.15 +0.3
2,384,412 + AO356_10550 0.18 +0.5
2,384,412 + AO356_10550 0.18 +0.5
2,384,412 + AO356_10550 0.18 +0.6
2,384,412 + AO356_10550 0.18 -1.1
2,384,412 + AO356_10550 0.18 -0.9
2,384,412 + AO356_10550 0.18 +0.2
2,384,412 + AO356_10550 0.18 +1.4
2,384,412 + AO356_10550 0.18 +0.7
2,384,412 + AO356_10550 0.18 -0.1
2,384,412 + AO356_10550 0.18 -0.1
2,384,413 - AO356_10550 0.18 -0.1
2,384,413 - AO356_10550 0.18 -0.6
2,384,413 - AO356_10550 0.18 -0.6
2,384,413 - AO356_10550 0.18 +1.0
2,384,413 - AO356_10550 0.18 +0.4
2,384,413 - AO356_10550 0.18 +0.3
2,384,413 - AO356_10550 0.18 -0.0
2,384,413 - AO356_10550 0.18 -0.7
2,384,413 - AO356_10550 0.18 +0.7
2,384,413 - AO356_10550 0.18 +0.6
2,384,622 + AO356_10550 0.41 -0.3
2,384,623 - AO356_10550 0.41 -0.2
2,384,623 - AO356_10550 0.41 -0.3
2,384,656 + AO356_10550 0.45 +1.1
2,384,657 - AO356_10550 0.45 +0.1
2,384,774 - AO356_10550 0.58 +0.4
2,384,775 + AO356_10550 0.58 +0.8
2,384,775 + AO356_10550 0.58 +0.2
2,384,775 + AO356_10550 0.58 +0.2
2,384,775 + AO356_10550 0.58 -0.1
2,384,775 + AO356_10550 0.58 -0.7
2,384,775 + AO356_10550 0.58 +0.2
2,384,775 + AO356_10550 0.58 +0.1
2,384,776 - AO356_10550 0.58 +0.2
2,384,776 - AO356_10550 0.58 -0.2
2,384,776 - AO356_10550 0.58 +1.4
2,384,776 - AO356_10550 0.58 +0.2
2,384,982 + AO356_10550 0.81 -0.4
2,384,982 + AO356_10550 0.81 +1.0
2,384,982 + AO356_10550 0.81 -0.2
2,384,983 - AO356_10550 0.81 +0.3
2,385,151 + +0.0
2,385,151 + +0.2
2,385,151 + -0.5
2,385,151 + +0.2
2,385,151 + +0.7
2,385,151 + +0.7
2,385,151 + -0.5
2,385,152 - +1.5
2,385,152 - +0.5
2,385,152 - +0.3
2,385,152 - +0.5
2,385,152 - +1.0
2,385,152 - +1.1
2,385,152 - +0.1
2,385,225 + +1.4
2,385,225 + +1.0
2,385,226 - +0.8
2,385,226 - -0.3
2,385,226 - +0.4
2,385,226 - +0.7
2,385,226 - -0.9
2,385,329 + +0.9
2,385,329 + -0.3
2,385,330 - +0.0
2,385,392 + +0.3
2,385,392 + +0.0
2,385,392 + +0.4
2,385,392 + -0.0
2,385,392 + +0.1
2,385,392 + +0.6
2,385,392 + +0.1
2,385,392 + +0.0
2,385,392 + -0.4
2,385,392 + +0.5
2,385,392 + +0.4
2,385,392 + +0.2
2,385,392 + -0.7
2,385,393 - +0.5
2,385,393 - +1.0
2,385,393 - -0.0
2,385,393 - +0.4
2,385,393 - -0.3
2,385,393 - -0.1
2,385,393 - +0.9
2,385,393 - +1.3
2,385,393 - -0.4
2,385,393 - +0.4
2,385,393 - +0.5
2,385,505 + +0.1
2,385,505 + -0.8
2,385,556 + +1.0
2,385,556 + +1.0
2,385,557 - -0.2
2,385,557 - +0.8
2,385,557 - +1.1
2,385,676 + AO356_10555 0.13 -0.1
2,385,676 + AO356_10555 0.13 +0.6
2,385,676 + AO356_10555 0.13 +0.3
2,385,676 + AO356_10555 0.13 -0.1
2,385,676 + AO356_10555 0.13 +0.4
2,385,676 + AO356_10555 0.13 +0.6
2,385,676 + AO356_10555 0.13 +0.4
2,385,676 + AO356_10555 0.13 +1.1
2,385,676 + AO356_10555 0.13 +1.1
2,385,676 + AO356_10555 0.13 +1.7
2,385,676 + AO356_10555 0.13 +1.3
2,385,676 + AO356_10555 0.13 +1.2
2,385,676 + AO356_10555 0.13 +0.4
2,385,676 + AO356_10555 0.13 +0.9
2,385,677 - AO356_10555 0.13 +1.2
2,385,677 - AO356_10555 0.13 +1.1
2,385,677 - AO356_10555 0.13 +0.6
2,385,677 - AO356_10555 0.13 +1.7
2,385,677 - AO356_10555 0.13 +0.3
2,385,677 - AO356_10555 0.13 +2.1
2,385,679 + AO356_10555 0.13 +1.0
2,385,679 + AO356_10555 0.13 +1.1
2,385,679 + AO356_10555 0.13 +0.4
2,385,679 + AO356_10555 0.13 +0.5
2,385,679 + AO356_10555 0.13 +0.1
2,385,680 - AO356_10555 0.13 +0.9
2,385,680 - AO356_10555 0.13 +0.4
2,385,680 - AO356_10555 0.13 +2.3
2,385,680 - AO356_10555 0.13 +0.2
2,385,680 - AO356_10555 0.13 +0.9
2,385,751 + AO356_10555 0.18 +0.1
2,385,751 + AO356_10555 0.18 +1.0
2,385,751 + AO356_10555 0.18 +1.2
2,385,751 + AO356_10555 0.18 -0.1
2,385,752 - AO356_10555 0.18 +0.8
2,385,760 + AO356_10555 0.19 +1.7
2,385,760 + AO356_10555 0.19 +1.0
2,385,760 + AO356_10555 0.19 +1.0
2,385,760 + AO356_10555 0.19 +1.0
2,385,766 + AO356_10555 0.19 +0.5
2,385,926 + AO356_10555 0.31 +0.3
2,385,926 + AO356_10555 0.31 +0.7
2,385,926 + AO356_10555 0.31 +0.6

Or see this region's nucleotide sequence