Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10420

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10410 and AO356_10415 overlap by 4 nucleotidesAO356_10415 and AO356_10420 overlap by 20 nucleotidesAO356_10420 and AO356_10425 are separated by 494 nucleotides AO356_10410: AO356_10410 - glutamine ABC transporter ATP-binding protein, at 2,350,112 to 2,350,894 _10410 AO356_10415: AO356_10415 - glutamine ABC transporter permease, at 2,350,891 to 2,351,550 _10415 AO356_10420: AO356_10420 - polar amino acid ABC transporter permease, at 2,351,531 to 2,352,196 _10420 AO356_10425: AO356_10425 - methionine ABC transporter substrate-binding protein, at 2,352,691 to 2,353,473 _10425 Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -2 -1 0 1 2at 2350.629 kb on + strand, within AO356_10410at 2350.629 kb on + strand, within AO356_10410at 2350.629 kb on + strand, within AO356_10410at 2350.630 kb on - strand, within AO356_10410at 2350.630 kb on - strand, within AO356_10410at 2350.630 kb on - strand, within AO356_10410at 2350.630 kb on - strand, within AO356_10410at 2350.630 kb on - strand, within AO356_10410at 2350.762 kb on + strand, within AO356_10410at 2350.763 kb on - strand, within AO356_10410at 2350.944 kb on - strandat 2350.950 kb on + strandat 2350.950 kb on + strandat 2350.950 kb on + strandat 2350.950 kb on + strandat 2350.951 kb on - strandat 2350.951 kb on - strandat 2350.951 kb on - strandat 2350.979 kb on + strand, within AO356_10415at 2350.980 kb on - strand, within AO356_10415at 2350.980 kb on - strand, within AO356_10415at 2350.997 kb on + strand, within AO356_10415at 2350.997 kb on + strand, within AO356_10415at 2350.997 kb on + strand, within AO356_10415at 2350.998 kb on - strand, within AO356_10415at 2350.998 kb on - strand, within AO356_10415at 2351.088 kb on - strand, within AO356_10415at 2351.088 kb on - strand, within AO356_10415at 2351.088 kb on - strand, within AO356_10415at 2351.224 kb on + strand, within AO356_10415at 2351.225 kb on - strand, within AO356_10415at 2351.255 kb on - strand, within AO356_10415at 2351.333 kb on + strand, within AO356_10415at 2351.333 kb on + strand, within AO356_10415at 2351.333 kb on + strand, within AO356_10415at 2351.334 kb on - strand, within AO356_10415at 2351.375 kb on + strand, within AO356_10415at 2351.429 kb on + strand, within AO356_10415at 2351.429 kb on + strand, within AO356_10415at 2351.430 kb on - strand, within AO356_10415at 2351.640 kb on + strand, within AO356_10420at 2351.641 kb on - strand, within AO356_10420at 2351.641 kb on - strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.649 kb on + strand, within AO356_10420at 2351.650 kb on - strand, within AO356_10420at 2351.650 kb on - strand, within AO356_10420at 2351.650 kb on - strand, within AO356_10420at 2351.650 kb on - strand, within AO356_10420at 2351.652 kb on + strand, within AO356_10420at 2351.652 kb on + strand, within AO356_10420at 2351.664 kb on + strand, within AO356_10420at 2351.664 kb on + strand, within AO356_10420at 2351.665 kb on - strand, within AO356_10420at 2351.665 kb on - strand, within AO356_10420at 2351.665 kb on - strand, within AO356_10420at 2351.679 kb on + strand, within AO356_10420at 2351.679 kb on + strand, within AO356_10420at 2351.679 kb on + strand, within AO356_10420at 2351.679 kb on + strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.680 kb on - strand, within AO356_10420at 2351.793 kb on + strand, within AO356_10420at 2351.793 kb on + strand, within AO356_10420at 2351.794 kb on - strand, within AO356_10420at 2351.973 kb on + strand, within AO356_10420at 2351.974 kb on - strand, within AO356_10420at 2351.992 kb on + strand, within AO356_10420at 2351.992 kb on + strand, within AO356_10420at 2351.993 kb on - strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.024 kb on + strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.025 kb on - strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.048 kb on + strand, within AO356_10420at 2352.049 kb on - strand, within AO356_10420at 2352.049 kb on - strand, within AO356_10420at 2352.049 kb on - strand, within AO356_10420at 2352.049 kb on - strand, within AO356_10420at 2352.175 kb on + strandat 2352.175 kb on + strandat 2352.175 kb on + strandat 2352.175 kb on + strandat 2352.176 kb on - strandat 2352.176 kb on - strandat 2352.184 kb on - strandat 2352.254 kb on - strandat 2352.254 kb on - strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.257 kb on + strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.258 kb on - strandat 2352.286 kb on - strandat 2352.371 kb on + strandat 2352.372 kb on - strandat 2352.372 kb on - strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.422 kb on + strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.423 kb on - strandat 2352.448 kb on - strandat 2352.480 kb on + strandat 2352.480 kb on + strandat 2352.480 kb on + strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.481 kb on - strandat 2352.592 kb on + strandat 2352.592 kb on + strandat 2352.592 kb on + strandat 2352.592 kb on + strandat 2352.592 kb on + strandat 2352.593 kb on - strandat 2352.646 kb on + strandat 2352.646 kb on + strandat 2352.646 kb on + strandat 2352.647 kb on - strandat 2352.680 kb on + strandat 2352.680 kb on + strandat 2352.719 kb on + strandat 2352.720 kb on - strandat 2352.720 kb on - strandat 2352.827 kb on + strand, within AO356_10425at 2352.828 kb on - strand, within AO356_10425at 2352.828 kb on - strand, within AO356_10425at 2352.828 kb on - strand, within AO356_10425at 2352.874 kb on - strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.893 kb on + strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2352.894 kb on - strand, within AO356_10425at 2353.139 kb on + strand, within AO356_10425at 2353.139 kb on + strand, within AO356_10425at 2353.140 kb on - strand, within AO356_10425at 2353.140 kb on - strand, within AO356_10425at 2353.140 kb on - strand, within AO356_10425at 2353.151 kb on + strand, within AO356_10425at 2353.151 kb on + strand, within AO356_10425

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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2,350,629 + AO356_10410 0.66 +0.3
2,350,629 + AO356_10410 0.66 -0.6
2,350,629 + AO356_10410 0.66 +0.0
2,350,630 - AO356_10410 0.66 -1.4
2,350,630 - AO356_10410 0.66 -1.1
2,350,630 - AO356_10410 0.66 -0.1
2,350,630 - AO356_10410 0.66 +0.3
2,350,630 - AO356_10410 0.66 -1.2
2,350,762 + AO356_10410 0.83 +1.0
2,350,763 - AO356_10410 0.83 +0.3
2,350,944 - +1.0
2,350,950 + +0.0
2,350,950 + -0.7
2,350,950 + +0.4
2,350,950 + -0.4
2,350,951 - -0.2
2,350,951 - -0.1
2,350,951 - -0.7
2,350,979 + AO356_10415 0.13 +0.5
2,350,980 - AO356_10415 0.13 -0.2
2,350,980 - AO356_10415 0.13 -0.6
2,350,997 + AO356_10415 0.16 -1.3
2,350,997 + AO356_10415 0.16 +0.7
2,350,997 + AO356_10415 0.16 +0.9
2,350,998 - AO356_10415 0.16 -0.8
2,350,998 - AO356_10415 0.16 -0.2
2,351,088 - AO356_10415 0.30 -0.2
2,351,088 - AO356_10415 0.30 -2.7
2,351,088 - AO356_10415 0.30 +0.6
2,351,224 + AO356_10415 0.50 +2.2
2,351,225 - AO356_10415 0.51 -0.4
2,351,255 - AO356_10415 0.55 -0.2
2,351,333 + AO356_10415 0.67 +0.5
2,351,333 + AO356_10415 0.67 -0.4
2,351,333 + AO356_10415 0.67 -0.1
2,351,334 - AO356_10415 0.67 -0.2
2,351,375 + AO356_10415 0.73 +0.6
2,351,429 + AO356_10415 0.82 +0.2
2,351,429 + AO356_10415 0.82 -0.3
2,351,430 - AO356_10415 0.82 +0.9
2,351,640 + AO356_10420 0.16 +0.7
2,351,641 - AO356_10420 0.17 -0.2
2,351,641 - AO356_10420 0.17 +0.6
2,351,649 + AO356_10420 0.18 -0.3
2,351,649 + AO356_10420 0.18 -0.5
2,351,649 + AO356_10420 0.18 -0.3
2,351,649 + AO356_10420 0.18 +0.6
2,351,649 + AO356_10420 0.18 +0.6
2,351,649 + AO356_10420 0.18 -0.1
2,351,649 + AO356_10420 0.18 -0.4
2,351,650 - AO356_10420 0.18 +0.2
2,351,650 - AO356_10420 0.18 -0.2
2,351,650 - AO356_10420 0.18 -0.5
2,351,650 - AO356_10420 0.18 +1.2
2,351,652 + AO356_10420 0.18 +0.4
2,351,652 + AO356_10420 0.18 -0.4
2,351,664 + AO356_10420 0.20 +0.2
2,351,664 + AO356_10420 0.20 +0.3
2,351,665 - AO356_10420 0.20 -0.3
2,351,665 - AO356_10420 0.20 -0.4
2,351,665 - AO356_10420 0.20 -0.0
2,351,679 + AO356_10420 0.22 +0.1
2,351,679 + AO356_10420 0.22 -0.3
2,351,679 + AO356_10420 0.22 -0.2
2,351,679 + AO356_10420 0.22 +0.7
2,351,680 - AO356_10420 0.22 -0.8
2,351,680 - AO356_10420 0.22 +0.0
2,351,680 - AO356_10420 0.22 +0.6
2,351,680 - AO356_10420 0.22 -0.9
2,351,680 - AO356_10420 0.22 +0.7
2,351,680 - AO356_10420 0.22 +0.6
2,351,680 - AO356_10420 0.22 +0.3
2,351,680 - AO356_10420 0.22 +0.1
2,351,793 + AO356_10420 0.39 +0.4
2,351,793 + AO356_10420 0.39 -0.4
2,351,794 - AO356_10420 0.39 +0.5
2,351,973 + AO356_10420 0.66 +0.3
2,351,974 - AO356_10420 0.67 -0.3
2,351,992 + AO356_10420 0.69 +0.1
2,351,992 + AO356_10420 0.69 +0.1
2,351,993 - AO356_10420 0.69 +0.2
2,352,024 + AO356_10420 0.74 -0.7
2,352,024 + AO356_10420 0.74 +1.1
2,352,024 + AO356_10420 0.74 +0.2
2,352,024 + AO356_10420 0.74 -0.0
2,352,024 + AO356_10420 0.74 -0.1
2,352,024 + AO356_10420 0.74 +1.2
2,352,024 + AO356_10420 0.74 -0.3
2,352,024 + AO356_10420 0.74 -0.0
2,352,024 + AO356_10420 0.74 +0.2
2,352,024 + AO356_10420 0.74 +0.1
2,352,024 + AO356_10420 0.74 -0.1
2,352,024 + AO356_10420 0.74 -0.4
2,352,024 + AO356_10420 0.74 +0.4
2,352,025 - AO356_10420 0.74 +1.3
2,352,025 - AO356_10420 0.74 +0.1
2,352,025 - AO356_10420 0.74 +0.7
2,352,025 - AO356_10420 0.74 +0.2
2,352,025 - AO356_10420 0.74 +0.2
2,352,025 - AO356_10420 0.74 +0.6
2,352,025 - AO356_10420 0.74 +0.5
2,352,025 - AO356_10420 0.74 -1.5
2,352,025 - AO356_10420 0.74 +0.0
2,352,025 - AO356_10420 0.74 -0.2
2,352,025 - AO356_10420 0.74 +0.5
2,352,048 + AO356_10420 0.78 -0.0
2,352,048 + AO356_10420 0.78 +0.5
2,352,048 + AO356_10420 0.78 +0.2
2,352,048 + AO356_10420 0.78 +0.4
2,352,048 + AO356_10420 0.78 +0.7
2,352,048 + AO356_10420 0.78 -0.3
2,352,048 + AO356_10420 0.78 -0.6
2,352,048 + AO356_10420 0.78 +0.4
2,352,049 - AO356_10420 0.78 +0.3
2,352,049 - AO356_10420 0.78 +0.6
2,352,049 - AO356_10420 0.78 +0.3
2,352,049 - AO356_10420 0.78 +0.8
2,352,175 + -0.4
2,352,175 + +0.4
2,352,175 + -0.0
2,352,175 + +0.6
2,352,176 - -0.2
2,352,176 - +0.5
2,352,184 - -0.1
2,352,254 - -0.1
2,352,254 - +0.0
2,352,257 + +1.3
2,352,257 + +0.4
2,352,257 + -0.2
2,352,257 + +0.3
2,352,257 + +0.1
2,352,257 + +0.7
2,352,257 + -1.9
2,352,257 + -0.1
2,352,258 - +0.1
2,352,258 - +1.2
2,352,258 - +0.1
2,352,258 - -0.0
2,352,258 - -0.7
2,352,258 - -0.9
2,352,258 - -1.2
2,352,258 - -0.1
2,352,258 - +0.3
2,352,258 - -0.2
2,352,258 - -0.2
2,352,258 - -0.9
2,352,258 - +0.5
2,352,258 - +0.8
2,352,286 - -0.8
2,352,371 + -0.9
2,352,372 - +0.7
2,352,372 - +0.5
2,352,422 + -0.0
2,352,422 + +0.3
2,352,422 + +0.6
2,352,422 + +0.7
2,352,422 + -0.9
2,352,422 + -0.9
2,352,422 + +1.3
2,352,422 + -0.2
2,352,423 - +0.3
2,352,423 - -0.4
2,352,423 - +1.9
2,352,423 - +0.8
2,352,423 - -0.8
2,352,423 - +0.7
2,352,423 - -0.2
2,352,423 - -0.4
2,352,423 - +0.2
2,352,448 - +0.2
2,352,480 + +0.3
2,352,480 + -0.2
2,352,480 + -0.1
2,352,481 - +0.5
2,352,481 - -0.5
2,352,481 - +0.2
2,352,481 - +0.0
2,352,481 - -0.5
2,352,481 - +0.2
2,352,481 - +0.5
2,352,592 + -0.1
2,352,592 + +0.6
2,352,592 + +0.7
2,352,592 + +0.5
2,352,592 + +1.4
2,352,593 - +0.9
2,352,646 + -0.6
2,352,646 + -0.9
2,352,646 + +0.3
2,352,647 - +0.8
2,352,680 + -0.6
2,352,680 + +1.0
2,352,719 + +0.5
2,352,720 - +0.7
2,352,720 - +0.4
2,352,827 + AO356_10425 0.17 +1.0
2,352,828 - AO356_10425 0.17 +0.8
2,352,828 - AO356_10425 0.17 +0.5
2,352,828 - AO356_10425 0.17 -0.1
2,352,874 - AO356_10425 0.23 +1.2
2,352,893 + AO356_10425 0.26 +0.3
2,352,893 + AO356_10425 0.26 -0.8
2,352,893 + AO356_10425 0.26 +0.0
2,352,893 + AO356_10425 0.26 +0.0
2,352,893 + AO356_10425 0.26 +0.3
2,352,893 + AO356_10425 0.26 -0.8
2,352,893 + AO356_10425 0.26 -0.3
2,352,893 + AO356_10425 0.26 -0.1
2,352,893 + AO356_10425 0.26 +0.0
2,352,893 + AO356_10425 0.26 +0.3
2,352,893 + AO356_10425 0.26 -0.2
2,352,893 + AO356_10425 0.26 +0.1
2,352,893 + AO356_10425 0.26 +0.7
2,352,893 + AO356_10425 0.26 -0.4
2,352,893 + AO356_10425 0.26 +0.5
2,352,894 - AO356_10425 0.26 -0.6
2,352,894 - AO356_10425 0.26 +1.0
2,352,894 - AO356_10425 0.26 +0.3
2,352,894 - AO356_10425 0.26 -0.3
2,352,894 - AO356_10425 0.26 -0.3
2,352,894 - AO356_10425 0.26 -0.2
2,352,894 - AO356_10425 0.26 -0.2
2,352,894 - AO356_10425 0.26 +0.6
2,352,894 - AO356_10425 0.26 +0.2
2,352,894 - AO356_10425 0.26 -0.5
2,353,139 + AO356_10425 0.57 -0.5
2,353,139 + AO356_10425 0.57 +0.5
2,353,140 - AO356_10425 0.57 +0.2
2,353,140 - AO356_10425 0.57 -0.9
2,353,140 - AO356_10425 0.57 -0.4
2,353,151 + AO356_10425 0.59 -0.6
2,353,151 + AO356_10425 0.59 +0.3

Or see this region's nucleotide sequence