Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08355

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08350 and AO356_08355 overlap by 1 nucleotidesAO356_08355 and AO356_08360 are separated by 176 nucleotidesAO356_08360 and AO356_08365 are separated by 30 nucleotides AO356_08350: AO356_08350 - urea ABC transporter permease subunit UrtC, at 1,878,151 to 1,879,227 _08350 AO356_08355: AO356_08355 - ABC transporter ATP-binding protein, at 1,879,227 to 1,880,087 _08355 AO356_08360: AO356_08360 - ABC transporter ATP-binding protein, at 1,880,264 to 1,880,962 _08360 AO356_08365: AO356_08365 - Urease maturation and nickel insertion protein UreD (from data), at 1,880,993 to 1,881,844 _08365 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2at 1878.295 kb on + strand, within AO356_08350at 1878.295 kb on + strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.368 kb on - strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.508 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.895 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1879.136 kb on - strandat 1879.136 kb on - strandat 1879.180 kb on + strandat 1879.180 kb on + strandat 1879.180 kb on + strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.181 kb on - strandat 1879.242 kb on - strandat 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.425 kb on + strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.426 kb on - strand, within AO356_08355at 1879.758 kb on - strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.760 kb on + strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1879.761 kb on - strand, within AO356_08355at 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.073 kb on + strandat 1880.074 kb on - strandat 1880.074 kb on - strandat 1880.292 kb on - strandat 1880.292 kb on - strandat 1880.292 kb on - strandat 1880.294 kb on + strandat 1880.295 kb on - strandat 1880.295 kb on - strandat 1880.501 kb on + strand, within AO356_08360at 1880.501 kb on + strand, within AO356_08360at 1880.501 kb on + strand, within AO356_08360at 1880.501 kb on + strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.502 kb on - strand, within AO356_08360at 1880.612 kb on + strand, within AO356_08360at 1880.613 kb on - strand, within AO356_08360at 1880.613 kb on - strand, within AO356_08360at 1880.613 kb on - strand, within AO356_08360at 1880.843 kb on + strand, within AO356_08360at 1880.843 kb on + strand, within AO356_08360at 1880.844 kb on - strand, within AO356_08360at 1880.873 kb on + strand, within AO356_08360at 1880.924 kb on - strandat 1880.924 kb on - strandat 1880.924 kb on - strandat 1880.924 kb on - strandat 1880.960 kb on + strandat 1880.960 kb on + strandat 1880.968 kb on - strandat 1880.968 kb on - strandat 1881.000 kb on + strandat 1881.000 kb on + strandat 1881.000 kb on + strandat 1881.001 kb on - strandat 1881.068 kb on + strandat 1881.068 kb on + strandat 1881.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,878,295 + AO356_08350 0.13 +0.1
1,878,295 + AO356_08350 0.13 +0.4
1,878,329 - AO356_08350 0.17 +0.6
1,878,329 - AO356_08350 0.17 +1.2
1,878,329 - AO356_08350 0.17 +0.7
1,878,368 - AO356_08350 0.20 +1.7
1,878,433 + AO356_08350 0.26 +0.5
1,878,433 + AO356_08350 0.26 +0.0
1,878,433 + AO356_08350 0.26 +0.9
1,878,433 + AO356_08350 0.26 -0.2
1,878,433 + AO356_08350 0.26 -0.1
1,878,433 + AO356_08350 0.26 +0.6
1,878,433 + AO356_08350 0.26 +1.2
1,878,434 - AO356_08350 0.26 +1.0
1,878,434 - AO356_08350 0.26 +1.4
1,878,434 - AO356_08350 0.26 +0.8
1,878,434 - AO356_08350 0.26 +0.5
1,878,434 - AO356_08350 0.26 +1.1
1,878,434 - AO356_08350 0.26 +0.7
1,878,434 - AO356_08350 0.26 +0.8
1,878,434 - AO356_08350 0.26 +2.4
1,878,508 + AO356_08350 0.33 -0.2
1,878,622 + AO356_08350 0.44 -0.0
1,878,622 + AO356_08350 0.44 +0.5
1,878,622 + AO356_08350 0.44 +0.3
1,878,622 + AO356_08350 0.44 +1.1
1,878,895 + AO356_08350 0.69 -0.2
1,878,967 + AO356_08350 0.76 +0.3
1,878,967 + AO356_08350 0.76 -0.5
1,878,967 + AO356_08350 0.76 +0.4
1,878,967 + AO356_08350 0.76 -0.8
1,878,967 + AO356_08350 0.76 -0.8
1,878,968 - AO356_08350 0.76 +1.1
1,878,968 - AO356_08350 0.76 +1.2
1,878,968 - AO356_08350 0.76 +1.0
1,879,136 - +0.5
1,879,136 - +0.5
1,879,180 + +0.1
1,879,180 + +0.4
1,879,180 + -1.4
1,879,181 - +2.6
1,879,181 - +1.8
1,879,181 - +0.9
1,879,181 - +1.0
1,879,181 - +1.0
1,879,181 - +0.3
1,879,242 - +0.7
1,879,425 + AO356_08355 0.23 -0.7
1,879,425 + AO356_08355 0.23 -0.3
1,879,425 + AO356_08355 0.23 +0.7
1,879,425 + AO356_08355 0.23 -0.1
1,879,426 - AO356_08355 0.23 +1.3
1,879,426 - AO356_08355 0.23 +1.9
1,879,426 - AO356_08355 0.23 +0.4
1,879,758 - AO356_08355 0.62 +1.8
1,879,760 + AO356_08355 0.62 -0.1
1,879,760 + AO356_08355 0.62 +0.5
1,879,760 + AO356_08355 0.62 -0.1
1,879,760 + AO356_08355 0.62 -0.3
1,879,760 + AO356_08355 0.62 +0.4
1,879,761 - AO356_08355 0.62 +1.0
1,879,761 - AO356_08355 0.62 +0.0
1,879,761 - AO356_08355 0.62 +0.5
1,879,761 - AO356_08355 0.62 +1.2
1,879,761 - AO356_08355 0.62 +0.2
1,879,761 - AO356_08355 0.62 +0.2
1,879,761 - AO356_08355 0.62 +0.7
1,879,761 - AO356_08355 0.62 +1.1
1,879,761 - AO356_08355 0.62 +0.7
1,879,761 - AO356_08355 0.62 +0.6
1,879,761 - AO356_08355 0.62 +1.8
1,880,073 + -0.5
1,880,073 + -0.3
1,880,073 + -0.9
1,880,073 + -0.1
1,880,073 + +1.1
1,880,074 - +1.1
1,880,074 - +0.4
1,880,292 - +1.3
1,880,292 - +1.2
1,880,292 - +1.0
1,880,294 + +0.4
1,880,295 - +0.7
1,880,295 - +1.4
1,880,501 + AO356_08360 0.34 -0.4
1,880,501 + AO356_08360 0.34 -1.8
1,880,501 + AO356_08360 0.34 -0.1
1,880,501 + AO356_08360 0.34 -0.6
1,880,502 - AO356_08360 0.34 +1.0
1,880,502 - AO356_08360 0.34 +0.7
1,880,502 - AO356_08360 0.34 +1.0
1,880,502 - AO356_08360 0.34 +1.7
1,880,502 - AO356_08360 0.34 +0.8
1,880,502 - AO356_08360 0.34 +0.6
1,880,612 + AO356_08360 0.50 -0.6
1,880,613 - AO356_08360 0.50 +1.6
1,880,613 - AO356_08360 0.50 +1.1
1,880,613 - AO356_08360 0.50 +0.8
1,880,843 + AO356_08360 0.83 -0.5
1,880,843 + AO356_08360 0.83 -0.8
1,880,844 - AO356_08360 0.83 +0.9
1,880,873 + AO356_08360 0.87 +0.4
1,880,924 - +0.4
1,880,924 - +0.3
1,880,924 - +0.8
1,880,924 - +1.8
1,880,960 + -0.4
1,880,960 + -0.0
1,880,968 - -1.3
1,880,968 - +0.0
1,881,000 + +1.0
1,881,000 + +0.6
1,881,000 + -1.4
1,881,001 - -1.6
1,881,068 + -2.4
1,881,068 + +0.6
1,881,068 + -1.1

Or see this region's nucleotide sequence