Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03445 and AO356_03450 are separated by 120 nucleotides AO356_03450 and AO356_03455 overlap by 4 nucleotides AO356_03455 and AO356_03460 are separated by 28 nucleotides
AO356_03445: AO356_03445 - 30S ribosomal protein S1, at 765,218 to 766,912
_03445
AO356_03450: AO356_03450 - cytidylate kinase, at 767,033 to 767,722
_03450
AO356_03455: AO356_03455 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 767,719 to 769,926
_03455
AO356_03460: AO356_03460 - aspartate aminotransferase, at 769,955 to 771,067
_03460
Position (kb) 767
768
769
770 Strain fitness (log2 ratio) -1
0
1 at 769.053 kb on - strand, within AO356_03455 at 769.053 kb on - strand, within AO356_03455 at 769.382 kb on - strand, within AO356_03455 at 769.590 kb on + strand, within AO356_03455 at 769.926 kb on + strand at 770.050 kb on - strand at 770.050 kb on - strand at 770.050 kb on - strand at 770.097 kb on + strand, within AO356_03460 at 770.098 kb on - strand, within AO356_03460 at 770.236 kb on - strand, within AO356_03460 at 770.374 kb on - strand, within AO356_03460 at 770.461 kb on - strand, within AO356_03460 at 770.461 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.692 kb on - strand, within AO356_03460 at 770.743 kb on - strand, within AO356_03460 at 770.743 kb on - strand, within AO356_03460
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 769,053 - AO356_03455 0.60 -0.5 769,053 - AO356_03455 0.60 -0.4 769,382 - AO356_03455 0.75 -0.4 769,590 + AO356_03455 0.85 -0.3 769,926 + -1.4 770,050 - -0.1 770,050 - -0.0 770,050 - +0.1 770,097 + AO356_03460 0.13 -1.5 770,098 - AO356_03460 0.13 -0.1 770,236 - AO356_03460 0.25 -0.8 770,374 - AO356_03460 0.38 -0.5 770,461 - AO356_03460 0.45 -0.7 770,461 - AO356_03460 0.45 +0.1 770,470 - AO356_03460 0.46 -0.2 770,470 - AO356_03460 0.46 +1.0 770,470 - AO356_03460 0.46 -0.2 770,692 - AO356_03460 0.66 +0.1 770,743 - AO356_03460 0.71 -0.1 770,743 - AO356_03460 0.71 +1.7
Or see this region's nucleotide sequence