Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18710 and AO353_18715 are separated by 30 nucleotides AO353_18715 and AO353_18720 are separated by 105 nucleotides
AO353_18710: AO353_18710 - chemotaxis protein CheY, at 4,116,405 to 4,118,111
_18710
AO353_18715: AO353_18715 - histidine kinase, at 4,118,142 to 4,118,486
_18715
AO353_18720: AO353_18720 - flagellar hook-length control protein, at 4,118,592 to 4,120,001
_18720
Position (kb) 4118
4119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4117.143 kb on - strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.157 kb on + strand, within AO353_18710 at 4117.158 kb on - strand, within AO353_18710 at 4117.158 kb on - strand, within AO353_18710 at 4117.158 kb on - strand, within AO353_18710 at 4117.240 kb on - strand, within AO353_18710 at 4117.417 kb on + strand, within AO353_18710 at 4117.417 kb on + strand, within AO353_18710 at 4117.417 kb on + strand, within AO353_18710 at 4117.418 kb on - strand, within AO353_18710 at 4117.590 kb on + strand, within AO353_18710 at 4117.590 kb on + strand, within AO353_18710 at 4117.591 kb on - strand, within AO353_18710 at 4117.591 kb on - strand, within AO353_18710 at 4117.591 kb on - strand, within AO353_18710 at 4117.591 kb on - strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.680 kb on + strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.681 kb on - strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.682 kb on + strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.683 kb on - strand, within AO353_18710 at 4117.737 kb on + strand, within AO353_18710 at 4117.737 kb on + strand, within AO353_18710 at 4117.738 kb on - strand, within AO353_18710 at 4117.738 kb on - strand, within AO353_18710 at 4117.738 kb on - strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.758 kb on + strand, within AO353_18710 at 4117.759 kb on - strand, within AO353_18710 at 4117.759 kb on - strand, within AO353_18710 at 4117.783 kb on + strand, within AO353_18710 at 4117.783 kb on + strand, within AO353_18710 at 4117.783 kb on + strand, within AO353_18710 at 4117.784 kb on - strand, within AO353_18710 at 4117.784 kb on - strand, within AO353_18710 at 4117.802 kb on + strand, within AO353_18710 at 4117.802 kb on + strand, within AO353_18710 at 4117.803 kb on - strand, within AO353_18710 at 4117.836 kb on + strand, within AO353_18710 at 4117.836 kb on + strand, within AO353_18710 at 4117.836 kb on + strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.837 kb on - strand, within AO353_18710 at 4117.878 kb on + strand, within AO353_18710 at 4117.878 kb on + strand, within AO353_18710 at 4117.878 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.892 kb on + strand, within AO353_18710 at 4117.893 kb on - strand, within AO353_18710 at 4117.893 kb on - strand, within AO353_18710 at 4117.893 kb on - strand, within AO353_18710 at 4117.893 kb on - strand, within AO353_18710 at 4117.966 kb on + strand at 4117.966 kb on + strand at 4117.966 kb on + strand at 4117.967 kb on - strand at 4117.967 kb on - strand at 4118.109 kb on + strand at 4118.109 kb on + strand at 4118.109 kb on + strand at 4118.109 kb on + strand at 4118.110 kb on - strand at 4118.110 kb on - strand at 4118.110 kb on - strand at 4118.170 kb on + strand at 4118.171 kb on - strand at 4118.171 kb on - strand at 4118.171 kb on - strand at 4118.171 kb on - strand at 4118.213 kb on - strand, within AO353_18715 at 4118.222 kb on + strand, within AO353_18715 at 4118.222 kb on + strand, within AO353_18715 at 4118.454 kb on + strand at 4118.454 kb on + strand at 4118.454 kb on + strand at 4118.454 kb on + strand at 4118.455 kb on - strand at 4118.455 kb on - strand at 4118.455 kb on - strand at 4118.561 kb on + strand at 4118.565 kb on + strand at 4118.565 kb on + strand at 4118.565 kb on + strand at 4118.565 kb on + strand at 4118.565 kb on + strand at 4118.565 kb on + strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.566 kb on - strand at 4118.727 kb on + strand at 4118.748 kb on - strand, within AO353_18720 at 4118.748 kb on - strand, within AO353_18720 at 4118.929 kb on + strand, within AO353_18720 at 4118.930 kb on - strand, within AO353_18720 at 4118.930 kb on - strand, within AO353_18720 at 4118.978 kb on + strand, within AO353_18720 at 4118.979 kb on - strand, within AO353_18720 at 4119.132 kb on - strand, within AO353_18720 at 4119.132 kb on - strand, within AO353_18720 at 4119.305 kb on + strand, within AO353_18720
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 4,117,143 - AO353_18710 0.43 +0.3 4,117,157 + AO353_18710 0.44 -2.3 4,117,157 + AO353_18710 0.44 -0.1 4,117,157 + AO353_18710 0.44 -0.1 4,117,157 + AO353_18710 0.44 -2.5 4,117,157 + AO353_18710 0.44 +0.3 4,117,157 + AO353_18710 0.44 +0.9 4,117,157 + AO353_18710 0.44 -0.5 4,117,157 + AO353_18710 0.44 +0.4 4,117,158 - AO353_18710 0.44 -2.2 4,117,158 - AO353_18710 0.44 -0.2 4,117,158 - AO353_18710 0.44 +0.4 4,117,240 - AO353_18710 0.49 +0.1 4,117,417 + AO353_18710 0.59 -0.2 4,117,417 + AO353_18710 0.59 +0.4 4,117,417 + AO353_18710 0.59 +0.8 4,117,418 - AO353_18710 0.59 -0.9 4,117,590 + AO353_18710 0.69 +1.6 4,117,590 + AO353_18710 0.69 -1.7 4,117,591 - AO353_18710 0.69 -1.0 4,117,591 - AO353_18710 0.69 +0.4 4,117,591 - AO353_18710 0.69 +0.7 4,117,591 - AO353_18710 0.69 -1.0 4,117,680 + AO353_18710 0.75 -0.4 4,117,680 + AO353_18710 0.75 +0.1 4,117,680 + AO353_18710 0.75 -0.3 4,117,680 + AO353_18710 0.75 -0.9 4,117,680 + AO353_18710 0.75 +1.6 4,117,680 + AO353_18710 0.75 +2.3 4,117,680 + AO353_18710 0.75 +0.8 4,117,680 + AO353_18710 0.75 -0.7 4,117,680 + AO353_18710 0.75 -0.4 4,117,680 + AO353_18710 0.75 -0.0 4,117,680 + AO353_18710 0.75 -0.6 4,117,680 + AO353_18710 0.75 -0.4 4,117,680 + AO353_18710 0.75 +0.5 4,117,680 + AO353_18710 0.75 -1.3 4,117,680 + AO353_18710 0.75 -0.2 4,117,680 + AO353_18710 0.75 -0.4 4,117,680 + AO353_18710 0.75 -0.0 4,117,680 + AO353_18710 0.75 +0.4 4,117,680 + AO353_18710 0.75 -0.3 4,117,680 + AO353_18710 0.75 +0.3 4,117,681 - AO353_18710 0.75 +2.6 4,117,681 - AO353_18710 0.75 -0.4 4,117,681 - AO353_18710 0.75 +0.3 4,117,681 - AO353_18710 0.75 -0.9 4,117,681 - AO353_18710 0.75 -1.7 4,117,681 - AO353_18710 0.75 +1.3 4,117,681 - AO353_18710 0.75 +0.7 4,117,681 - AO353_18710 0.75 +1.1 4,117,681 - AO353_18710 0.75 -0.7 4,117,681 - AO353_18710 0.75 -2.1 4,117,681 - AO353_18710 0.75 -1.9 4,117,681 - AO353_18710 0.75 +0.4 4,117,681 - AO353_18710 0.75 +0.8 4,117,682 + AO353_18710 0.75 -1.6 4,117,682 + AO353_18710 0.75 +0.1 4,117,682 + AO353_18710 0.75 +0.1 4,117,682 + AO353_18710 0.75 +0.5 4,117,682 + AO353_18710 0.75 +1.3 4,117,682 + AO353_18710 0.75 +0.5 4,117,682 + AO353_18710 0.75 -1.2 4,117,682 + AO353_18710 0.75 +0.3 4,117,682 + AO353_18710 0.75 +1.4 4,117,682 + AO353_18710 0.75 -0.5 4,117,682 + AO353_18710 0.75 +0.5 4,117,682 + AO353_18710 0.75 -1.5 4,117,682 + AO353_18710 0.75 +0.2 4,117,682 + AO353_18710 0.75 -0.0 4,117,682 + AO353_18710 0.75 +2.6 4,117,682 + AO353_18710 0.75 -0.5 4,117,682 + AO353_18710 0.75 +0.1 4,117,682 + AO353_18710 0.75 -0.3 4,117,682 + AO353_18710 0.75 +0.2 4,117,682 + AO353_18710 0.75 +1.6 4,117,682 + AO353_18710 0.75 +0.2 4,117,682 + AO353_18710 0.75 +0.0 4,117,682 + AO353_18710 0.75 -0.1 4,117,683 - AO353_18710 0.75 -0.3 4,117,683 - AO353_18710 0.75 +0.9 4,117,683 - AO353_18710 0.75 +1.6 4,117,683 - AO353_18710 0.75 +0.1 4,117,683 - AO353_18710 0.75 -1.4 4,117,683 - AO353_18710 0.75 +1.6 4,117,683 - AO353_18710 0.75 +0.1 4,117,683 - AO353_18710 0.75 +1.2 4,117,683 - AO353_18710 0.75 +1.4 4,117,683 - AO353_18710 0.75 +1.3 4,117,683 - AO353_18710 0.75 -0.4 4,117,683 - AO353_18710 0.75 +0.8 4,117,683 - AO353_18710 0.75 +0.3 4,117,683 - AO353_18710 0.75 -0.0 4,117,683 - AO353_18710 0.75 -0.3 4,117,683 - AO353_18710 0.75 -0.3 4,117,683 - AO353_18710 0.75 -0.3 4,117,683 - AO353_18710 0.75 -0.1 4,117,683 - AO353_18710 0.75 -0.8 4,117,683 - AO353_18710 0.75 +1.4 4,117,683 - AO353_18710 0.75 -0.6 4,117,683 - AO353_18710 0.75 -1.1 4,117,683 - AO353_18710 0.75 +0.2 4,117,683 - AO353_18710 0.75 +0.4 4,117,683 - AO353_18710 0.75 -2.9 4,117,683 - AO353_18710 0.75 -0.1 4,117,683 - AO353_18710 0.75 +0.1 4,117,737 + AO353_18710 0.78 -0.4 4,117,737 + AO353_18710 0.78 +0.2 4,117,738 - AO353_18710 0.78 +0.4 4,117,738 - AO353_18710 0.78 -1.2 4,117,738 - AO353_18710 0.78 +0.4 4,117,758 + AO353_18710 0.79 -0.4 4,117,758 + AO353_18710 0.79 -0.4 4,117,758 + AO353_18710 0.79 -1.2 4,117,758 + AO353_18710 0.79 -0.2 4,117,758 + AO353_18710 0.79 +0.0 4,117,758 + AO353_18710 0.79 +1.2 4,117,759 - AO353_18710 0.79 -0.2 4,117,759 - AO353_18710 0.79 -0.9 4,117,783 + AO353_18710 0.81 -0.7 4,117,783 + AO353_18710 0.81 +1.3 4,117,783 + AO353_18710 0.81 -1.6 4,117,784 - AO353_18710 0.81 -1.0 4,117,784 - AO353_18710 0.81 -0.2 4,117,802 + AO353_18710 0.82 -0.3 4,117,802 + AO353_18710 0.82 -1.0 4,117,803 - AO353_18710 0.82 -1.0 4,117,836 + AO353_18710 0.84 +0.6 4,117,836 + AO353_18710 0.84 +0.1 4,117,836 + AO353_18710 0.84 -0.5 4,117,837 - AO353_18710 0.84 -0.2 4,117,837 - AO353_18710 0.84 -0.4 4,117,837 - AO353_18710 0.84 +0.4 4,117,837 - AO353_18710 0.84 -0.1 4,117,837 - AO353_18710 0.84 -0.4 4,117,837 - AO353_18710 0.84 -0.7 4,117,878 + AO353_18710 0.86 +0.8 4,117,878 + AO353_18710 0.86 +0.6 4,117,878 + AO353_18710 0.86 -1.4 4,117,892 + AO353_18710 0.87 -1.2 4,117,892 + AO353_18710 0.87 +0.0 4,117,892 + AO353_18710 0.87 -0.0 4,117,892 + AO353_18710 0.87 +0.1 4,117,892 + AO353_18710 0.87 +1.0 4,117,892 + AO353_18710 0.87 -0.0 4,117,892 + AO353_18710 0.87 -1.1 4,117,893 - AO353_18710 0.87 -0.2 4,117,893 - AO353_18710 0.87 -0.6 4,117,893 - AO353_18710 0.87 -0.8 4,117,893 - AO353_18710 0.87 -1.2 4,117,966 + +0.4 4,117,966 + +0.4 4,117,966 + +0.4 4,117,967 - +0.1 4,117,967 - -0.7 4,118,109 + +0.2 4,118,109 + -1.2 4,118,109 + -0.1 4,118,109 + +1.6 4,118,110 - -0.6 4,118,110 - +0.4 4,118,110 - +0.2 4,118,170 + +0.7 4,118,171 - +1.3 4,118,171 - -0.1 4,118,171 - +0.2 4,118,171 - +1.0 4,118,213 - AO353_18715 0.21 -0.1 4,118,222 + AO353_18715 0.23 -2.4 4,118,222 + AO353_18715 0.23 -1.4 4,118,454 + -0.3 4,118,454 + +1.1 4,118,454 + -0.2 4,118,454 + +1.1 4,118,455 - -0.7 4,118,455 - +0.5 4,118,455 - +0.8 4,118,561 + -0.2 4,118,565 + +1.0 4,118,565 + +1.3 4,118,565 + -0.3 4,118,565 + +0.2 4,118,565 + +0.6 4,118,565 + +1.2 4,118,566 - -1.0 4,118,566 - +0.1 4,118,566 - -0.3 4,118,566 - +1.3 4,118,566 - -0.7 4,118,566 - -1.0 4,118,566 - +0.8 4,118,566 - +0.2 4,118,566 - +0.1 4,118,566 - -1.0 4,118,566 - -0.1 4,118,727 + +1.0 4,118,748 - AO353_18720 0.11 +0.1 4,118,748 - AO353_18720 0.11 +0.8 4,118,929 + AO353_18720 0.24 +1.6 4,118,930 - AO353_18720 0.24 -0.7 4,118,930 - AO353_18720 0.24 -1.2 4,118,978 + AO353_18720 0.27 -1.2 4,118,979 - AO353_18720 0.27 +0.5 4,119,132 - AO353_18720 0.38 -0.0 4,119,132 - AO353_18720 0.38 +0.4 4,119,305 + AO353_18720 0.51 +1.2
Or see this region's nucleotide sequence