Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2969

Experiment: 7 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2968 and DvMF_2969 are separated by 318 nucleotidesDvMF_2969 and DvMF_2970 overlap by 4 nucleotidesDvMF_2970 and DvMF_2971 overlap by 4 nucleotides DvMF_2968: DvMF_2968 - extracellular solute-binding protein family 1 (RefSeq), at 3,743,181 to 3,744,251 _2968 DvMF_2969: DvMF_2969 - ABC transporter related (RefSeq), at 3,744,570 to 3,745,826 _2969 DvMF_2970: DvMF_2970 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,745,823 to 3,746,728 _2970 DvMF_2971: DvMF_2971 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,746,725 to 3,747,585 _2971 Position (kb) 3744 3745 3746Strain fitness (log2 ratio) -1 0 1 2at 3743.622 kb on + strand, within DvMF_2968at 3743.728 kb on + strand, within DvMF_2968at 3744.104 kb on - strand, within DvMF_2968at 3744.555 kb on + strandat 3744.566 kb on - strandat 3744.679 kb on - strandat 3744.731 kb on - strand, within DvMF_2969at 3744.804 kb on - strand, within DvMF_2969at 3744.939 kb on + strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3745.136 kb on + strand, within DvMF_2969at 3745.502 kb on + strand, within DvMF_2969at 3745.640 kb on + strand, within DvMF_2969at 3745.954 kb on + strand, within DvMF_2970at 3745.974 kb on - strand, within DvMF_2970at 3746.035 kb on - strand, within DvMF_2970at 3746.037 kb on + strand, within DvMF_2970at 3746.114 kb on - strand, within DvMF_2970at 3746.344 kb on + strand, within DvMF_2970at 3746.360 kb on - strand, within DvMF_2970at 3746.362 kb on + strand, within DvMF_2970at 3746.397 kb on + strand, within DvMF_2970at 3746.444 kb on - strand, within DvMF_2970at 3746.644 kb on - strandat 3746.715 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 37C
remove
3,743,622 + DvMF_2968 0.41 +0.6
3,743,728 + DvMF_2968 0.51 +0.8
3,744,104 - DvMF_2968 0.86 +0.6
3,744,555 + +0.4
3,744,566 - +1.1
3,744,679 - +0.2
3,744,731 - DvMF_2969 0.13 +0.6
3,744,804 - DvMF_2969 0.19 +2.3
3,744,939 + DvMF_2969 0.29 +2.3
3,744,992 - DvMF_2969 0.34 +0.3
3,744,992 - DvMF_2969 0.34 +0.7
3,745,136 + DvMF_2969 0.45 +0.6
3,745,502 + DvMF_2969 0.74 +1.2
3,745,640 + DvMF_2969 0.85 +1.0
3,745,954 + DvMF_2970 0.14 +0.2
3,745,974 - DvMF_2970 0.17 +0.7
3,746,035 - DvMF_2970 0.23 -0.1
3,746,037 + DvMF_2970 0.24 +0.9
3,746,114 - DvMF_2970 0.32 -0.4
3,746,344 + DvMF_2970 0.58 +0.3
3,746,360 - DvMF_2970 0.59 +2.0
3,746,362 + DvMF_2970 0.59 +0.5
3,746,397 + DvMF_2970 0.63 +0.2
3,746,444 - DvMF_2970 0.69 -0.0
3,746,644 - +1.0
3,746,715 + +0.8

Or see this region's nucleotide sequence