Experiment: 7 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2851 and DvMF_2852 are separated by 421 nucleotides DvMF_2852 and DvMF_2853 overlap by 4 nucleotides DvMF_2853 and DvMF_2854 are separated by 89 nucleotides DvMF_2854 and DvMF_2855 overlap by 11 nucleotides DvMF_2855 and DvMF_2856 are separated by 2 nucleotides
DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361
_2851
DvMF_2852: DvMF_2852 - nitroreductase (RefSeq), at 3,606,783 to 3,607,319
_2852
DvMF_2853: DvMF_2853 - beta-lactamase domain protein (RefSeq), at 3,607,316 to 3,607,948
_2853
DvMF_2854: DvMF_2854 - hypothetical protein (RefSeq), at 3,608,038 to 3,608,229
_2854
DvMF_2855: DvMF_2855 - hypothetical protein (RefSeq), at 3,608,219 to 3,608,392
_2855
DvMF_2856: DvMF_2856 - NADPH-dependent FMN reductase (RefSeq), at 3,608,395 to 3,609,027
_2856
Position (kb)
3607
3608 Strain fitness (log2 ratio)
-1
0
1 at 3606.401 kb on - strand at 3606.577 kb on - strand at 3606.655 kb on + strand at 3607.201 kb on + strand, within DvMF_2852 at 3607.460 kb on - strand, within DvMF_2853 at 3607.498 kb on + strand, within DvMF_2853 at 3607.520 kb on + strand, within DvMF_2853 at 3607.585 kb on + strand, within DvMF_2853 at 3607.588 kb on - strand, within DvMF_2853 at 3607.632 kb on - strand, within DvMF_2853 at 3607.690 kb on - strand, within DvMF_2853 at 3607.698 kb on + strand, within DvMF_2853 at 3607.735 kb on + strand, within DvMF_2853 at 3607.977 kb on + strand at 3607.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 37C remove 3,606,401 - +0.4 3,606,577 - +0.6 3,606,655 + +1.0 3,607,201 + DvMF_2852 0.78 +0.5 3,607,460 - DvMF_2853 0.23 -0.0 3,607,498 + DvMF_2853 0.29 +0.6 3,607,520 + DvMF_2853 0.32 +0.6 3,607,585 + DvMF_2853 0.42 +0.4 3,607,588 - DvMF_2853 0.43 -1.3 3,607,632 - DvMF_2853 0.50 +0.3 3,607,690 - DvMF_2853 0.59 -0.8 3,607,698 + DvMF_2853 0.60 -0.0 3,607,735 + DvMF_2853 0.66 +0.4 3,607,977 + +0.6 3,607,977 + +0.5
Or see this region's nucleotide sequence