Experiment: 7 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2590 and DvMF_2591 are separated by 165 nucleotides DvMF_2591 and DvMF_2592 are separated by 109 nucleotides DvMF_2592 and DvMF_2593 are separated by 170 nucleotides
DvMF_2590: DvMF_2590 - response regulator receiver protein (RefSeq), at 3,275,128 to 3,275,523
_2590
DvMF_2591: DvMF_2591 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,275,689 to 3,276,141
_2591
DvMF_2592: DvMF_2592 - two component transcriptional regulator, Fis family (RefSeq), at 3,276,251 to 3,276,637
_2592
DvMF_2593: DvMF_2593 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 3,276,808 to 3,278,199
_2593
Position (kb)
3275
3276
3277 Strain fitness (log2 ratio)
-2
-1
0
1 at 3274.754 kb on - strand at 3274.885 kb on + strand at 3275.145 kb on + strand at 3275.145 kb on + strand at 3275.145 kb on + strand at 3275.317 kb on - strand, within DvMF_2590 at 3275.591 kb on - strand at 3275.595 kb on - strand at 3275.687 kb on + strand at 3275.695 kb on - strand at 3275.736 kb on + strand, within DvMF_2591 at 3275.812 kb on + strand, within DvMF_2591 at 3275.869 kb on + strand, within DvMF_2591 at 3276.448 kb on + strand, within DvMF_2592 at 3276.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 37C remove 3,274,754 - -0.0 3,274,885 + +0.0 3,275,145 + +0.8 3,275,145 + +0.2 3,275,145 + -0.1 3,275,317 - DvMF_2590 0.48 +0.3 3,275,591 - -0.0 3,275,595 - +1.3 3,275,687 + +0.7 3,275,695 - +0.2 3,275,736 + DvMF_2591 0.10 -2.0 3,275,812 + DvMF_2591 0.27 -1.0 3,275,869 + DvMF_2591 0.40 -1.6 3,276,448 + DvMF_2592 0.51 -0.4 3,276,667 + +0.3
Or see this region's nucleotide sequence