Experiment: 7 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2442 and DvMF_R0068 are separated by 111 nucleotides DvMF_R0068 and DvMF_2443 are separated by 212 nucleotides DvMF_2443 and DvMF_2444 are separated by 6 nucleotides
DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682
_2442
DvMF_R0068: DvMF_R0068 - tRNA-Phe (RefSeq), at 3,076,794 to 3,076,869
_R0068
DvMF_2443: DvMF_2443 - hypothetical protein (RefSeq), at 3,077,082 to 3,077,657
_2443
DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584
_2444
Position (kb)
3077
3078 Strain fitness (log2 ratio)
-1
0
1 at 3076.164 kb on + strand, within DvMF_2442 at 3076.513 kb on - strand, within DvMF_2442 at 3076.745 kb on - strand at 3076.747 kb on - strand at 3077.080 kb on + strand at 3077.136 kb on + strand at 3077.159 kb on - strand, within DvMF_2443 at 3077.238 kb on + strand, within DvMF_2443 at 3077.240 kb on - strand, within DvMF_2443 at 3077.252 kb on + strand, within DvMF_2443 at 3077.351 kb on - strand, within DvMF_2443 at 3077.496 kb on - strand, within DvMF_2443 at 3077.851 kb on + strand, within DvMF_2444 at 3077.870 kb on + strand, within DvMF_2444 at 3078.040 kb on + strand, within DvMF_2444 at 3078.145 kb on - strand, within DvMF_2444 at 3078.162 kb on + strand, within DvMF_2444 at 3078.384 kb on - strand, within DvMF_2444 at 3078.489 kb on + strand, within DvMF_2444
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 37C remove 3,076,164 + DvMF_2442 0.30 +0.9 3,076,513 - DvMF_2442 0.77 +0.1 3,076,745 - +1.1 3,076,747 - +0.2 3,077,080 + +0.8 3,077,136 + +0.1 3,077,159 - DvMF_2443 0.13 -0.3 3,077,238 + DvMF_2443 0.27 +0.2 3,077,240 - DvMF_2443 0.27 +0.3 3,077,252 + DvMF_2443 0.30 -0.5 3,077,351 - DvMF_2443 0.47 -0.2 3,077,496 - DvMF_2443 0.72 -0.0 3,077,851 + DvMF_2444 0.20 +0.4 3,077,870 + DvMF_2444 0.22 +0.5 3,078,040 + DvMF_2444 0.41 +1.1 3,078,145 - DvMF_2444 0.52 +1.1 3,078,162 + DvMF_2444 0.54 +0.2 3,078,384 - DvMF_2444 0.78 +0.4 3,078,489 + DvMF_2444 0.90 +1.4
Or see this region's nucleotide sequence