Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2281

Experiment: 7 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2280 and DvMF_2281 are separated by 256 nucleotidesDvMF_2281 and DvMF_2282 are separated by 635 nucleotides DvMF_2280: DvMF_2280 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,868,302 to 2,869,330 _2280 DvMF_2281: DvMF_2281 - transcriptional regulator, ArsR family (RefSeq), at 2,869,587 to 2,869,955 _2281 DvMF_2282: DvMF_2282 - permease (RefSeq), at 2,870,591 to 2,871,583 _2282 Position (kb) 2869 2870Strain fitness (log2 ratio) -1 0 1at 2868.697 kb on + strand, within DvMF_2280at 2868.876 kb on + strand, within DvMF_2280at 2869.481 kb on + strandat 2869.994 kb on - strandat 2870.205 kb on - strandat 2870.236 kb on + strandat 2870.513 kb on - strandat 2870.633 kb on - strandat 2870.727 kb on + strand, within DvMF_2282at 2870.727 kb on + strand, within DvMF_2282at 2870.779 kb on - strand, within DvMF_2282

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 37C
remove
2,868,697 + DvMF_2280 0.38 -0.5
2,868,876 + DvMF_2280 0.56 -1.0
2,869,481 + +0.7
2,869,994 - +0.5
2,870,205 - +0.7
2,870,236 + +0.7
2,870,513 - +0.6
2,870,633 - +1.3
2,870,727 + DvMF_2282 0.14 +0.6
2,870,727 + DvMF_2282 0.14 +0.6
2,870,779 - DvMF_2282 0.19 +1.0

Or see this region's nucleotide sequence