Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2179

Experiment: 7 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2177 and DvMF_2178 are separated by 242 nucleotidesDvMF_2178 and DvMF_2179 are separated by 184 nucleotidesDvMF_2179 and DvMF_2180 are separated by 391 nucleotides DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832 _2177 DvMF_2178: DvMF_2178 - export-related chaperone CsaA (RefSeq), at 2,717,075 to 2,717,440 _2178 DvMF_2179: DvMF_2179 - Methyltransferase type 11 (RefSeq), at 2,717,625 to 2,718,539 _2179 DvMF_2180: DvMF_2180 - metallo-beta-lactamase/flavodoxin domain-containing protein (RefSeq), at 2,718,931 to 2,720,124 _2180 Position (kb) 2717 2718 2719Strain fitness (log2 ratio) -1 0 1 2at 2716.641 kb on + strandat 2716.750 kb on + strandat 2716.759 kb on - strandat 2716.909 kb on - strandat 2717.091 kb on - strandat 2717.127 kb on + strand, within DvMF_2178at 2717.322 kb on + strand, within DvMF_2178at 2717.478 kb on + strandat 2717.756 kb on + strand, within DvMF_2179at 2717.874 kb on - strand, within DvMF_2179at 2718.216 kb on - strand, within DvMF_2179at 2718.375 kb on + strand, within DvMF_2179at 2718.721 kb on + strandat 2719.182 kb on + strand, within DvMF_2180at 2719.360 kb on - strand, within DvMF_2180at 2719.362 kb on - strand, within DvMF_2180at 2719.440 kb on + strand, within DvMF_2180at 2719.494 kb on - strand, within DvMF_2180

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 37C
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2,716,641 + +0.7
2,716,750 + +0.2
2,716,759 - +0.2
2,716,909 - +0.4
2,717,091 - +0.0
2,717,127 + DvMF_2178 0.14 +0.6
2,717,322 + DvMF_2178 0.67 +0.8
2,717,478 + +1.5
2,717,756 + DvMF_2179 0.14 +1.1
2,717,874 - DvMF_2179 0.27 +2.2
2,718,216 - DvMF_2179 0.65 +1.3
2,718,375 + DvMF_2179 0.82 +0.7
2,718,721 + +1.8
2,719,182 + DvMF_2180 0.21 +0.4
2,719,360 - DvMF_2180 0.36 +0.0
2,719,362 - DvMF_2180 0.36 +0.5
2,719,440 + DvMF_2180 0.43 +0.5
2,719,494 - DvMF_2180 0.47 +0.9

Or see this region's nucleotide sequence