Experiment: 7 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1729 and DvMF_1730 are separated by 242 nucleotides DvMF_1730 and DvMF_1731 are separated by 330 nucleotides DvMF_1731 and DvMF_1732 overlap by 4 nucleotides
DvMF_1729: DvMF_1729 - DNA mismatch repair protein MutL (RefSeq), at 2,112,107 to 2,114,398
_1729
DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164
_1730
DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899
_1731
DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864
_1732
Position (kb)
2114
2115
2116
2117 Strain fitness (log2 ratio)
-1
0
1 at 2113.740 kb on - strand, within DvMF_1729 at 2113.864 kb on - strand, within DvMF_1729 at 2113.885 kb on + strand, within DvMF_1729 at 2113.898 kb on - strand, within DvMF_1729 at 2114.010 kb on - strand, within DvMF_1729 at 2114.130 kb on - strand, within DvMF_1729 at 2114.149 kb on - strand, within DvMF_1729 at 2114.352 kb on + strand at 2115.126 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.213 kb on - strand, within DvMF_1730 at 2115.213 kb on - strand, within DvMF_1730 at 2115.223 kb on + strand, within DvMF_1730 at 2115.402 kb on - strand, within DvMF_1730 at 2115.504 kb on + strand, within DvMF_1730 at 2115.681 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.922 kb on - strand, within DvMF_1730 at 2116.113 kb on + strand at 2116.701 kb on - strand, within DvMF_1731 at 2116.711 kb on - strand, within DvMF_1731 at 2116.725 kb on - strand, within DvMF_1731 at 2117.132 kb on - strand, within DvMF_1732
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 37C remove 2,113,740 - DvMF_1729 0.71 +0.5 2,113,864 - DvMF_1729 0.77 +0.1 2,113,885 + DvMF_1729 0.78 +0.6 2,113,898 - DvMF_1729 0.78 +0.7 2,114,010 - DvMF_1729 0.83 +0.1 2,114,130 - DvMF_1729 0.88 +0.4 2,114,149 - DvMF_1729 0.89 +1.1 2,114,352 + +0.3 2,115,126 + DvMF_1730 0.32 +0.7 2,115,205 + DvMF_1730 0.37 +1.4 2,115,205 + DvMF_1730 0.37 +0.2 2,115,205 + DvMF_1730 0.37 +0.5 2,115,205 + DvMF_1730 0.37 +0.9 2,115,213 - DvMF_1730 0.38 +0.8 2,115,213 - DvMF_1730 0.38 +0.2 2,115,223 + DvMF_1730 0.38 +0.8 2,115,402 - DvMF_1730 0.50 +0.8 2,115,504 + DvMF_1730 0.57 +0.7 2,115,681 - DvMF_1730 0.68 +0.3 2,115,766 - DvMF_1730 0.74 +0.4 2,115,766 - DvMF_1730 0.74 +1.7 2,115,922 - DvMF_1730 0.84 +0.3 2,116,113 + +1.3 2,116,701 - DvMF_1731 0.51 +1.4 2,116,711 - DvMF_1731 0.53 +0.9 2,116,725 - DvMF_1731 0.57 +0.3 2,117,132 - DvMF_1732 0.24 +0.3
Or see this region's nucleotide sequence