Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1596

Experiment: 7 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1594 and DvMF_1595 overlap by 4 nucleotidesDvMF_1595 and DvMF_1596 overlap by 8 nucleotidesDvMF_1596 and DvMF_1597 are separated by 6 nucleotides DvMF_1594: DvMF_1594 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,966,385 to 1,966,948 _1594 DvMF_1595: DvMF_1595 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 1,966,945 to 1,967,550 _1595 DvMF_1596: DvMF_1596 - NADH dehydrogenase (quinone) (RefSeq), at 1,967,543 to 1,968,763 _1596 DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744 _1597 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -2 -1 0 1at 1966.780 kb on + strand, within DvMF_1594at 1966.854 kb on + strand, within DvMF_1594at 1967.048 kb on - strand, within DvMF_1595at 1967.050 kb on + strand, within DvMF_1595at 1967.050 kb on + strand, within DvMF_1595at 1967.230 kb on + strand, within DvMF_1595at 1967.319 kb on + strand, within DvMF_1595at 1967.327 kb on - strand, within DvMF_1595at 1967.833 kb on + strand, within DvMF_1596at 1968.114 kb on - strand, within DvMF_1596at 1968.288 kb on - strand, within DvMF_1596at 1968.368 kb on + strand, within DvMF_1596at 1968.514 kb on - strand, within DvMF_1596at 1968.516 kb on - strand, within DvMF_1596at 1968.607 kb on - strand, within DvMF_1596at 1969.124 kb on - strand, within DvMF_1597at 1969.174 kb on - strand, within DvMF_1597at 1969.261 kb on + strand, within DvMF_1597at 1969.344 kb on - strand, within DvMF_1597at 1969.416 kb on - strand, within DvMF_1597at 1969.661 kb on - strandat 1969.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 37C
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1,966,780 + DvMF_1594 0.70 -0.4
1,966,854 + DvMF_1594 0.83 -0.3
1,967,048 - DvMF_1595 0.17 +0.9
1,967,050 + DvMF_1595 0.17 +0.6
1,967,050 + DvMF_1595 0.17 -0.0
1,967,230 + DvMF_1595 0.47 -0.6
1,967,319 + DvMF_1595 0.62 +1.2
1,967,327 - DvMF_1595 0.63 -0.8
1,967,833 + DvMF_1596 0.24 -0.3
1,968,114 - DvMF_1596 0.47 -0.7
1,968,288 - DvMF_1596 0.61 -0.8
1,968,368 + DvMF_1596 0.68 -0.2
1,968,514 - DvMF_1596 0.80 -0.6
1,968,516 - DvMF_1596 0.80 -0.0
1,968,607 - DvMF_1596 0.87 -1.8
1,969,124 - DvMF_1597 0.36 -0.6
1,969,174 - DvMF_1597 0.41 -1.1
1,969,261 + DvMF_1597 0.50 -1.4
1,969,344 - DvMF_1597 0.59 -0.6
1,969,416 - DvMF_1597 0.66 -0.3
1,969,661 - -0.6
1,969,749 + +0.2

Or see this region's nucleotide sequence