Experiment: 7 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1594 and DvMF_1595 overlap by 4 nucleotides DvMF_1595 and DvMF_1596 overlap by 8 nucleotides DvMF_1596 and DvMF_1597 are separated by 6 nucleotides
DvMF_1594: DvMF_1594 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,966,385 to 1,966,948
_1594
DvMF_1595: DvMF_1595 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 1,966,945 to 1,967,550
_1595
DvMF_1596: DvMF_1596 - NADH dehydrogenase (quinone) (RefSeq), at 1,967,543 to 1,968,763
_1596
DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744
_1597
Position (kb)
1967
1968
1969 Strain fitness (log2 ratio)
-2
-1
0
1 at 1966.780 kb on + strand, within DvMF_1594 at 1966.854 kb on + strand, within DvMF_1594 at 1967.048 kb on - strand, within DvMF_1595 at 1967.050 kb on + strand, within DvMF_1595 at 1967.050 kb on + strand, within DvMF_1595 at 1967.230 kb on + strand, within DvMF_1595 at 1967.319 kb on + strand, within DvMF_1595 at 1967.327 kb on - strand, within DvMF_1595 at 1967.833 kb on + strand, within DvMF_1596 at 1968.114 kb on - strand, within DvMF_1596 at 1968.288 kb on - strand, within DvMF_1596 at 1968.368 kb on + strand, within DvMF_1596 at 1968.514 kb on - strand, within DvMF_1596 at 1968.516 kb on - strand, within DvMF_1596 at 1968.607 kb on - strand, within DvMF_1596 at 1969.124 kb on - strand, within DvMF_1597 at 1969.174 kb on - strand, within DvMF_1597 at 1969.261 kb on + strand, within DvMF_1597 at 1969.344 kb on - strand, within DvMF_1597 at 1969.416 kb on - strand, within DvMF_1597 at 1969.661 kb on - strand at 1969.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 37C remove 1,966,780 + DvMF_1594 0.70 -0.4 1,966,854 + DvMF_1594 0.83 -0.3 1,967,048 - DvMF_1595 0.17 +0.9 1,967,050 + DvMF_1595 0.17 +0.6 1,967,050 + DvMF_1595 0.17 -0.0 1,967,230 + DvMF_1595 0.47 -0.6 1,967,319 + DvMF_1595 0.62 +1.2 1,967,327 - DvMF_1595 0.63 -0.8 1,967,833 + DvMF_1596 0.24 -0.3 1,968,114 - DvMF_1596 0.47 -0.7 1,968,288 - DvMF_1596 0.61 -0.8 1,968,368 + DvMF_1596 0.68 -0.2 1,968,514 - DvMF_1596 0.80 -0.6 1,968,516 - DvMF_1596 0.80 -0.0 1,968,607 - DvMF_1596 0.87 -1.8 1,969,124 - DvMF_1597 0.36 -0.6 1,969,174 - DvMF_1597 0.41 -1.1 1,969,261 + DvMF_1597 0.50 -1.4 1,969,344 - DvMF_1597 0.59 -0.6 1,969,416 - DvMF_1597 0.66 -0.3 1,969,661 - -0.6 1,969,749 + +0.2
Or see this region's nucleotide sequence