Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6043

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6041 and Pf6N2E2_6042 are separated by 127 nucleotidesPf6N2E2_6042 and Pf6N2E2_6043 are separated by 723 nucleotidesPf6N2E2_6043 and Pf6N2E2_6044 are separated by 499 nucleotides Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792 _6041 Pf6N2E2_6042 - hypothetical protein, at 6,861,920 to 6,862,060 _6042 Pf6N2E2_6043 - hypothetical protein, at 6,862,784 to 6,863,062 _6043 Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652 _6044 Position (kb) 6862 6863 6864Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6861.790 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.921 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strandat 6861.923 kb on + strandat 6862.118 kb on - strandat 6862.167 kb on - strandat 6862.167 kb on - strandat 6862.201 kb on + strandat 6862.216 kb on - strandat 6862.216 kb on - strandat 6862.261 kb on - strandat 6862.261 kb on - strandat 6862.261 kb on - strandat 6862.299 kb on + strandat 6862.299 kb on + strandat 6862.299 kb on + strandat 6862.440 kb on - strandat 6862.542 kb on + strandat 6862.542 kb on + strandat 6862.542 kb on + strandat 6862.543 kb on - strandat 6862.543 kb on - strandat 6862.544 kb on + strandat 6862.544 kb on + strandat 6862.544 kb on + strandat 6862.545 kb on - strandat 6862.545 kb on - strandat 6862.551 kb on + strandat 6862.551 kb on + strandat 6862.577 kb on + strandat 6862.644 kb on + strandat 6862.645 kb on - strandat 6862.785 kb on + strandat 6863.062 kb on + strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.066 kb on + strandat 6863.066 kb on + strandat 6863.067 kb on - strandat 6863.067 kb on - strandat 6863.136 kb on + strandat 6863.137 kb on - strandat 6863.195 kb on - strandat 6863.199 kb on - strandat 6863.232 kb on + strandat 6863.232 kb on + strandat 6863.233 kb on - strandat 6863.233 kb on - strandat 6863.239 kb on + strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.249 kb on + strandat 6863.262 kb on + strandat 6863.263 kb on - strandat 6863.289 kb on + strandat 6863.289 kb on + strandat 6863.303 kb on - strandat 6863.307 kb on + strandat 6863.308 kb on - strandat 6863.390 kb on + strandat 6863.413 kb on + strandat 6863.413 kb on + strandat 6863.413 kb on + strandat 6863.414 kb on - strandat 6863.643 kb on + strandat 6863.643 kb on + strandat 6863.643 kb on + strandat 6863.644 kb on - strandat 6863.644 kb on - strandat 6863.644 kb on - strandat 6863.777 kb on + strand, within Pf6N2E2_6044at 6863.778 kb on - strand, within Pf6N2E2_6044at 6863.779 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.830 kb on - strand, within Pf6N2E2_6044at 6863.830 kb on - strand, within Pf6N2E2_6044at 6863.845 kb on - strand, within Pf6N2E2_6044at 6863.845 kb on - strand, within Pf6N2E2_6044at 6864.048 kb on + strand, within Pf6N2E2_6044

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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6,861,790 + +1.5
6,861,921 + -2.6
6,861,921 + -0.3
6,861,921 + -0.1
6,861,921 + +0.9
6,861,921 + +1.1
6,861,923 + +1.0
6,861,923 + -0.3
6,861,923 + -0.6
6,861,923 + +0.2
6,862,118 - +0.6
6,862,167 - +0.1
6,862,167 - +0.4
6,862,201 + -0.4
6,862,216 - -0.1
6,862,216 - +1.6
6,862,261 - +0.4
6,862,261 - +1.3
6,862,261 - -0.0
6,862,299 + +0.6
6,862,299 + -0.3
6,862,299 + +0.8
6,862,440 - +0.6
6,862,542 + +0.0
6,862,542 + +0.8
6,862,542 + -1.0
6,862,543 - +0.0
6,862,543 - -0.2
6,862,544 + +1.4
6,862,544 + +1.0
6,862,544 + +0.1
6,862,545 - +0.9
6,862,545 - -1.2
6,862,551 + +1.9
6,862,551 + +0.1
6,862,577 + -1.1
6,862,644 + -0.3
6,862,645 - +0.8
6,862,785 + -0.1
6,863,062 + +0.6
6,863,063 - +0.3
6,863,063 - -1.6
6,863,063 - -0.8
6,863,063 - +0.5
6,863,066 + -0.3
6,863,066 + -0.5
6,863,067 - +0.3
6,863,067 - -0.6
6,863,136 + +1.3
6,863,137 - -0.8
6,863,195 - -0.2
6,863,199 - +2.2
6,863,232 + +1.2
6,863,232 + +0.6
6,863,233 - +0.5
6,863,233 - +0.3
6,863,239 + +0.2
6,863,240 - -0.7
6,863,240 - -0.6
6,863,240 - +0.8
6,863,240 - -1.3
6,863,240 - +2.2
6,863,249 + +0.4
6,863,262 + -0.4
6,863,263 - +0.3
6,863,289 + -0.4
6,863,289 + -0.4
6,863,303 - +0.7
6,863,307 + -1.7
6,863,308 - -0.4
6,863,390 + +3.8
6,863,413 + +0.1
6,863,413 + +1.2
6,863,413 + -1.0
6,863,414 - -0.2
6,863,643 + -0.7
6,863,643 + +0.3
6,863,643 + -1.2
6,863,644 - -1.4
6,863,644 - +0.6
6,863,644 - -0.4
6,863,777 + Pf6N2E2_6044 0.10 +0.8
6,863,778 - Pf6N2E2_6044 0.10 -1.8
6,863,779 + Pf6N2E2_6044 0.10 -0.4
6,863,829 + Pf6N2E2_6044 0.13 +0.4
6,863,829 + Pf6N2E2_6044 0.13 -0.6
6,863,829 + Pf6N2E2_6044 0.13 -0.4
6,863,829 + Pf6N2E2_6044 0.13 +0.9
6,863,829 + Pf6N2E2_6044 0.13 +0.0
6,863,830 - Pf6N2E2_6044 0.13 +0.3
6,863,830 - Pf6N2E2_6044 0.13 +1.9
6,863,845 - Pf6N2E2_6044 0.14 +0.0
6,863,845 - Pf6N2E2_6044 0.14 +0.5
6,864,048 + Pf6N2E2_6044 0.23 +1.3

Or see this region's nucleotide sequence