Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5787

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5786 and Pf6N2E2_5787 overlap by 4 nucleotidesPf6N2E2_5787 and Pf6N2E2_5788 overlap by 14 nucleotidesPf6N2E2_5788 and Pf6N2E2_5789 overlap by 4 nucleotides Pf6N2E2_5786 - ABC transporter, ATP-binding protein, at 6,604,713 to 6,605,702 _5786 Pf6N2E2_5787 - Thiamin ABC transporter, transmembrane component, at 6,605,699 to 6,606,499 _5787 Pf6N2E2_5788 - ABC transporter permease protein, at 6,606,486 to 6,607,331 _5788 Pf6N2E2_5789 - FIG00956482: hypothetical protein, at 6,607,328 to 6,608,134 _5789 Position (kb) 6605 6606 6607Strain fitness (log2 ratio) -2 -1 0 1 2at 6604.719 kb on + strandat 6604.720 kb on - strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.801 kb on - strandat 6604.801 kb on - strandat 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6605.038 kb on + strand, within Pf6N2E2_5786at 6605.038 kb on + strand, within Pf6N2E2_5786at 6605.039 kb on - strand, within Pf6N2E2_5786at 6605.064 kb on + strand, within Pf6N2E2_5786at 6605.065 kb on - strand, within Pf6N2E2_5786at 6605.452 kb on + strand, within Pf6N2E2_5786at 6605.452 kb on + strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786at 6605.695 kb on + strandat 6605.695 kb on + strandat 6605.696 kb on - strandat 6605.763 kb on + strandat 6605.763 kb on + strandat 6605.838 kb on + strand, within Pf6N2E2_5787at 6605.940 kb on - strand, within Pf6N2E2_5787at 6606.069 kb on + strand, within Pf6N2E2_5787at 6606.070 kb on - strand, within Pf6N2E2_5787at 6606.070 kb on - strand, within Pf6N2E2_5787at 6606.123 kb on + strand, within Pf6N2E2_5787at 6606.123 kb on + strand, within Pf6N2E2_5787at 6606.124 kb on - strand, within Pf6N2E2_5787at 6606.124 kb on - strand, within Pf6N2E2_5787at 6606.124 kb on - strand, within Pf6N2E2_5787at 6606.220 kb on - strand, within Pf6N2E2_5787at 6606.339 kb on + strand, within Pf6N2E2_5787at 6606.340 kb on - strand, within Pf6N2E2_5787at 6606.399 kb on + strand, within Pf6N2E2_5787at 6606.399 kb on + strand, within Pf6N2E2_5787at 6606.400 kb on - strand, within Pf6N2E2_5787at 6606.400 kb on - strand, within Pf6N2E2_5787at 6606.400 kb on - strand, within Pf6N2E2_5787at 6606.400 kb on - strand, within Pf6N2E2_5787at 6606.447 kb on + strandat 6606.448 kb on - strandat 6606.465 kb on + strandat 6606.465 kb on + strandat 6606.466 kb on - strandat 6606.466 kb on - strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.502 kb on + strandat 6606.503 kb on - strandat 6606.503 kb on - strandat 6606.503 kb on - strandat 6606.503 kb on - strandat 6606.503 kb on - strandat 6606.503 kb on - strandat 6606.667 kb on + strand, within Pf6N2E2_5788at 6606.667 kb on + strand, within Pf6N2E2_5788at 6606.668 kb on - strand, within Pf6N2E2_5788at 6606.668 kb on - strand, within Pf6N2E2_5788at 6606.680 kb on - strand, within Pf6N2E2_5788at 6606.680 kb on - strand, within Pf6N2E2_5788at 6606.868 kb on + strand, within Pf6N2E2_5788at 6606.868 kb on + strand, within Pf6N2E2_5788at 6606.868 kb on + strand, within Pf6N2E2_5788at 6606.868 kb on + strand, within Pf6N2E2_5788at 6606.868 kb on + strand, within Pf6N2E2_5788at 6606.869 kb on - strand, within Pf6N2E2_5788at 6606.869 kb on - strand, within Pf6N2E2_5788at 6606.869 kb on - strand, within Pf6N2E2_5788at 6606.874 kb on + strand, within Pf6N2E2_5788at 6607.075 kb on + strand, within Pf6N2E2_5788at 6607.075 kb on + strand, within Pf6N2E2_5788at 6607.076 kb on - strand, within Pf6N2E2_5788at 6607.076 kb on - strand, within Pf6N2E2_5788at 6607.076 kb on - strand, within Pf6N2E2_5788at 6607.076 kb on - strand, within Pf6N2E2_5788at 6607.156 kb on + strand, within Pf6N2E2_5788at 6607.156 kb on + strand, within Pf6N2E2_5788at 6607.337 kb on + strandat 6607.338 kb on - strandat 6607.350 kb on + strandat 6607.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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6,604,719 + +0.7
6,604,720 - +0.1
6,604,800 + +0.1
6,604,800 + -0.1
6,604,800 + +0.3
6,604,800 + -1.1
6,604,801 - +2.0
6,604,801 - +1.2
6,604,993 + Pf6N2E2_5786 0.28 +0.3
6,604,993 + Pf6N2E2_5786 0.28 +0.3
6,604,993 + Pf6N2E2_5786 0.28 -0.4
6,604,994 - Pf6N2E2_5786 0.28 -0.9
6,604,994 - Pf6N2E2_5786 0.28 -1.4
6,604,994 - Pf6N2E2_5786 0.28 +1.5
6,604,994 - Pf6N2E2_5786 0.28 +0.0
6,604,994 - Pf6N2E2_5786 0.28 +0.1
6,605,038 + Pf6N2E2_5786 0.33 -1.2
6,605,038 + Pf6N2E2_5786 0.33 +0.1
6,605,039 - Pf6N2E2_5786 0.33 +0.4
6,605,064 + Pf6N2E2_5786 0.35 -1.3
6,605,065 - Pf6N2E2_5786 0.36 +1.3
6,605,452 + Pf6N2E2_5786 0.75 -0.7
6,605,452 + Pf6N2E2_5786 0.75 -1.3
6,605,453 - Pf6N2E2_5786 0.75 -0.9
6,605,453 - Pf6N2E2_5786 0.75 +2.0
6,605,453 - Pf6N2E2_5786 0.75 -0.2
6,605,695 + -0.2
6,605,695 + +0.8
6,605,696 - -1.3
6,605,763 + +0.5
6,605,763 + -0.4
6,605,838 + Pf6N2E2_5787 0.17 -1.9
6,605,940 - Pf6N2E2_5787 0.30 +0.6
6,606,069 + Pf6N2E2_5787 0.46 +2.4
6,606,070 - Pf6N2E2_5787 0.46 +1.2
6,606,070 - Pf6N2E2_5787 0.46 +0.8
6,606,123 + Pf6N2E2_5787 0.53 -0.6
6,606,123 + Pf6N2E2_5787 0.53 -1.0
6,606,124 - Pf6N2E2_5787 0.53 +0.1
6,606,124 - Pf6N2E2_5787 0.53 +0.5
6,606,124 - Pf6N2E2_5787 0.53 -0.6
6,606,220 - Pf6N2E2_5787 0.65 -0.1
6,606,339 + Pf6N2E2_5787 0.80 -1.5
6,606,340 - Pf6N2E2_5787 0.80 -1.3
6,606,399 + Pf6N2E2_5787 0.87 -0.6
6,606,399 + Pf6N2E2_5787 0.87 -0.3
6,606,400 - Pf6N2E2_5787 0.88 -0.1
6,606,400 - Pf6N2E2_5787 0.88 +0.1
6,606,400 - Pf6N2E2_5787 0.88 -0.9
6,606,400 - Pf6N2E2_5787 0.88 -0.4
6,606,447 + +0.5
6,606,448 - +0.6
6,606,465 + +0.3
6,606,465 + +0.2
6,606,466 - -0.0
6,606,466 - +0.2
6,606,502 + -2.5
6,606,502 + +0.3
6,606,502 + +0.7
6,606,502 + -0.2
6,606,502 + +0.7
6,606,502 + -2.2
6,606,502 + -0.8
6,606,502 + -1.1
6,606,503 - -0.5
6,606,503 - +1.3
6,606,503 - -1.0
6,606,503 - +0.0
6,606,503 - +0.9
6,606,503 - +0.2
6,606,667 + Pf6N2E2_5788 0.21 -1.0
6,606,667 + Pf6N2E2_5788 0.21 -0.8
6,606,668 - Pf6N2E2_5788 0.22 +0.6
6,606,668 - Pf6N2E2_5788 0.22 -2.3
6,606,680 - Pf6N2E2_5788 0.23 +0.1
6,606,680 - Pf6N2E2_5788 0.23 +0.1
6,606,868 + Pf6N2E2_5788 0.45 +0.6
6,606,868 + Pf6N2E2_5788 0.45 +0.2
6,606,868 + Pf6N2E2_5788 0.45 -0.1
6,606,868 + Pf6N2E2_5788 0.45 +1.7
6,606,868 + Pf6N2E2_5788 0.45 +0.6
6,606,869 - Pf6N2E2_5788 0.45 +0.6
6,606,869 - Pf6N2E2_5788 0.45 +0.5
6,606,869 - Pf6N2E2_5788 0.45 +0.1
6,606,874 + Pf6N2E2_5788 0.46 -1.0
6,607,075 + Pf6N2E2_5788 0.70 +1.7
6,607,075 + Pf6N2E2_5788 0.70 +0.1
6,607,076 - Pf6N2E2_5788 0.70 +0.1
6,607,076 - Pf6N2E2_5788 0.70 -0.3
6,607,076 - Pf6N2E2_5788 0.70 +0.3
6,607,076 - Pf6N2E2_5788 0.70 -1.3
6,607,156 + Pf6N2E2_5788 0.79 +1.0
6,607,156 + Pf6N2E2_5788 0.79 +0.5
6,607,337 + +0.0
6,607,338 - -0.6
6,607,350 + -0.7
6,607,351 - +0.5

Or see this region's nucleotide sequence