Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3273

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3270 and Pf6N2E2_3271 are separated by 15 nucleotidesPf6N2E2_3271 and Pf6N2E2_3272 are separated by 268 nucleotidesPf6N2E2_3272 and Pf6N2E2_3273 are separated by 4 nucleotidesPf6N2E2_3273 and Pf6N2E2_3274 are separated by 64 nucleotidesPf6N2E2_3274 and Pf6N2E2_3275 are separated by 2 nucleotides Pf6N2E2_3270 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 3,775,636 to 3,776,493 _3270 Pf6N2E2_3271 - Phosphocarrier protein, nitrogen regulation associated, at 3,776,509 to 3,776,784 _3271 Pf6N2E2_3272 - Metal transporter, ZIP family, at 3,777,053 to 3,777,433 _3272 Pf6N2E2_3273 - Metal transporter, ZIP family, at 3,777,438 to 3,777,908 _3273 Pf6N2E2_3274 - Manganese superoxide dismutase (EC 1.15.1.1), at 3,777,973 to 3,778,584 _3274 Pf6N2E2_3275 - FOG: TPR repeat, at 3,778,587 to 3,779,027 _3275 Position (kb) 3777 3778Strain fitness (log2 ratio) -3 -2 -1 0 1at 3776.491 kb on + strandat 3776.492 kb on - strandat 3776.647 kb on - strand, within Pf6N2E2_3271at 3776.647 kb on - strand, within Pf6N2E2_3271at 3776.764 kb on + strandat 3776.765 kb on - strandat 3776.765 kb on - strandat 3776.783 kb on - strandat 3776.783 kb on - strandat 3776.909 kb on - strandat 3777.516 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.708 kb on + strand, within Pf6N2E2_3273at 3777.709 kb on - strand, within Pf6N2E2_3273at 3777.879 kb on + strandat 3777.879 kb on + strandat 3777.879 kb on + strandat 3777.899 kb on - strandat 3777.964 kb on - strandat 3778.028 kb on + strandat 3778.028 kb on + strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.029 kb on - strandat 3778.043 kb on + strand, within Pf6N2E2_3274at 3778.044 kb on - strand, within Pf6N2E2_3274at 3778.064 kb on + strand, within Pf6N2E2_3274at 3778.064 kb on + strand, within Pf6N2E2_3274at 3778.065 kb on - strand, within Pf6N2E2_3274at 3778.073 kb on + strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.074 kb on - strand, within Pf6N2E2_3274at 3778.076 kb on + strand, within Pf6N2E2_3274at 3778.076 kb on + strand, within Pf6N2E2_3274at 3778.077 kb on - strand, within Pf6N2E2_3274at 3778.077 kb on - strand, within Pf6N2E2_3274at 3778.113 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.481 kb on + strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.482 kb on - strand, within Pf6N2E2_3274at 3778.502 kb on + strand, within Pf6N2E2_3274at 3778.550 kb on + strandat 3778.551 kb on - strandat 3778.575 kb on + strandat 3778.575 kb on + strandat 3778.575 kb on + strandat 3778.670 kb on - strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.708 kb on + strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275at 3778.709 kb on - strand, within Pf6N2E2_3275

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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3,776,491 + -0.5
3,776,492 - +0.3
3,776,647 - Pf6N2E2_3271 0.50 -1.6
3,776,647 - Pf6N2E2_3271 0.50 +0.2
3,776,764 + -0.7
3,776,765 - +0.0
3,776,765 - -0.3
3,776,783 - -0.2
3,776,783 - +1.1
3,776,909 - -0.9
3,777,516 + Pf6N2E2_3273 0.17 -1.0
3,777,559 + Pf6N2E2_3273 0.26 +0.9
3,777,559 + Pf6N2E2_3273 0.26 -1.4
3,777,559 + Pf6N2E2_3273 0.26 -0.5
3,777,559 + Pf6N2E2_3273 0.26 -0.6
3,777,560 - Pf6N2E2_3273 0.26 -1.9
3,777,560 - Pf6N2E2_3273 0.26 -1.2
3,777,708 + Pf6N2E2_3273 0.57 -0.7
3,777,709 - Pf6N2E2_3273 0.58 -2.7
3,777,879 + +0.1
3,777,879 + +0.3
3,777,879 + +1.2
3,777,899 - +0.4
3,777,964 - +0.3
3,778,028 + -0.4
3,778,028 + -1.7
3,778,029 - +0.3
3,778,029 - +0.4
3,778,029 - +1.3
3,778,029 - +0.6
3,778,043 + Pf6N2E2_3274 0.11 +1.1
3,778,044 - Pf6N2E2_3274 0.12 +0.5
3,778,064 + Pf6N2E2_3274 0.15 +0.2
3,778,064 + Pf6N2E2_3274 0.15 +1.6
3,778,065 - Pf6N2E2_3274 0.15 -2.8
3,778,073 + Pf6N2E2_3274 0.16 -1.3
3,778,074 - Pf6N2E2_3274 0.17 -0.8
3,778,074 - Pf6N2E2_3274 0.17 -0.4
3,778,074 - Pf6N2E2_3274 0.17 +1.5
3,778,074 - Pf6N2E2_3274 0.17 -0.4
3,778,076 + Pf6N2E2_3274 0.17 -1.6
3,778,076 + Pf6N2E2_3274 0.17 +0.1
3,778,077 - Pf6N2E2_3274 0.17 +0.3
3,778,077 - Pf6N2E2_3274 0.17 -0.2
3,778,113 + Pf6N2E2_3274 0.23 +0.7
3,778,481 + Pf6N2E2_3274 0.83 +0.3
3,778,481 + Pf6N2E2_3274 0.83 -2.2
3,778,481 + Pf6N2E2_3274 0.83 -1.1
3,778,482 - Pf6N2E2_3274 0.83 +0.0
3,778,482 - Pf6N2E2_3274 0.83 +1.2
3,778,482 - Pf6N2E2_3274 0.83 -0.2
3,778,482 - Pf6N2E2_3274 0.83 -0.8
3,778,482 - Pf6N2E2_3274 0.83 -0.8
3,778,502 + Pf6N2E2_3274 0.86 +0.6
3,778,550 + +0.9
3,778,551 - -0.1
3,778,575 + -0.1
3,778,575 + -2.6
3,778,575 + +0.8
3,778,670 - Pf6N2E2_3275 0.19 +0.5
3,778,708 + Pf6N2E2_3275 0.27 -0.5
3,778,708 + Pf6N2E2_3275 0.27 +1.0
3,778,708 + Pf6N2E2_3275 0.27 -0.0
3,778,708 + Pf6N2E2_3275 0.27 +1.0
3,778,708 + Pf6N2E2_3275 0.27 +0.4
3,778,708 + Pf6N2E2_3275 0.27 +0.5
3,778,708 + Pf6N2E2_3275 0.27 -0.1
3,778,709 - Pf6N2E2_3275 0.28 +0.4
3,778,709 - Pf6N2E2_3275 0.28 -0.1
3,778,709 - Pf6N2E2_3275 0.28 +0.3
3,778,709 - Pf6N2E2_3275 0.28 -0.3

Or see this region's nucleotide sequence