Experiment: D-Cellobiose (C); no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_4209 and Ga0059261_4210 overlap by 4 nucleotides Ga0059261_4210 and Ga0059261_4211 are separated by 117 nucleotides Ga0059261_4211 and Ga0059261_4212 are separated by 34 nucleotides
Ga0059261_4209: Ga0059261_4209 - Transglycosylase SLT domain, at 4,362,058 to 4,363,845
_4209
Ga0059261_4210: Ga0059261_4210 - Uracil-DNA glycosylase, at 4,363,842 to 4,364,579
_4210
Ga0059261_4211: Ga0059261_4211 - Dehydrogenases (flavoproteins), at 4,364,697 to 4,366,358
_4211
Ga0059261_4212: Ga0059261_4212 - TPR repeat, at 4,366,393 to 4,367,955
_4212
Position (kb) 4364
4365
4366
4367 Strain fitness (log2 ratio) -1
0
1
2
3 at 4363.834 kb on - strand at 4363.834 kb on - strand at 4366.356 kb on + strand at 4366.357 kb on + strand at 4366.429 kb on + strand at 4366.540 kb on + strand at 4366.764 kb on + strand, within Ga0059261_4212 at 4366.809 kb on + strand, within Ga0059261_4212 at 4366.819 kb on + strand, within Ga0059261_4212 at 4366.819 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.962 kb on + strand, within Ga0059261_4212 at 4366.962 kb on + strand, within Ga0059261_4212 at 4367.218 kb on + strand, within Ga0059261_4212 at 4367.269 kb on + strand, within Ga0059261_4212 at 4367.269 kb on + strand, within Ga0059261_4212
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins remove 4,363,834 - -1.1 4,363,834 - -1.5 4,366,356 + +1.0 4,366,357 + +1.2 4,366,429 + +1.4 4,366,540 + +1.8 4,366,764 + Ga0059261_4212 0.24 -0.9 4,366,809 + Ga0059261_4212 0.27 +0.2 4,366,819 + Ga0059261_4212 0.27 +2.2 4,366,819 + Ga0059261_4212 0.27 +0.9 4,366,821 + Ga0059261_4212 0.27 -0.6 4,366,821 + Ga0059261_4212 0.27 +3.4 4,366,821 + Ga0059261_4212 0.27 +1.1 4,366,821 + Ga0059261_4212 0.27 +1.4 4,366,821 + Ga0059261_4212 0.27 -0.2 4,366,821 + Ga0059261_4212 0.27 -1.7 4,366,821 + Ga0059261_4212 0.27 +0.7 4,366,821 + Ga0059261_4212 0.27 -0.7 4,366,821 + Ga0059261_4212 0.27 +1.2 4,366,962 + Ga0059261_4212 0.36 +0.5 4,366,962 + Ga0059261_4212 0.36 +1.0 4,367,218 + Ga0059261_4212 0.53 -0.7 4,367,269 + Ga0059261_4212 0.56 +2.4 4,367,269 + Ga0059261_4212 0.56 +1.2
Or see this region's nucleotide sequence