Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2162

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2161 and Ga0059261_2162 overlap by 4 nucleotidesGa0059261_2162 and Ga0059261_2163 are separated by 24 nucleotidesGa0059261_2163 and Ga0059261_2164 are separated by 22 nucleotides Ga0059261_2161: Ga0059261_2161 - hydroxymethylbilane synthase (EC 2.5.1.61), at 2,273,306 to 2,274,214 _2161 Ga0059261_2162: Ga0059261_2162 - Uroporphyrinogen-III synthase, at 2,274,211 to 2,274,879 _2162 Ga0059261_2163: Ga0059261_2163 - hypothetical protein, at 2,274,904 to 2,275,797 _2163 Ga0059261_2164: Ga0059261_2164 - Acyl-CoA dehydrogenases, at 2,275,820 to 2,277,004 _2164 Position (kb) 2274 2275Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2275.222 kb on + strandat 2275.223 kb on - strand, within Ga0059261_2163at 2275.358 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.737 kb on - strandat 2275.737 kb on - strandat 2275.737 kb on - strandat 2275.795 kb on + strandat 2275.795 kb on + strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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2,273,294 + -0.1
2,273,294 + -1.9
2,273,294 + +0.4
2,273,294 + +0.2
2,274,894 + -1.5
2,274,894 + -2.7
2,274,894 + -4.3
2,274,894 + -4.1
2,275,222 + -1.2
2,275,223 - Ga0059261_2163 0.36 -1.5
2,275,358 + -1.9
2,275,736 + -3.9
2,275,736 + -1.9
2,275,736 + -2.1
2,275,736 + -3.3
2,275,736 + -4.0
2,275,736 + -2.2
2,275,736 + -3.6
2,275,737 - -1.0
2,275,737 - -5.7
2,275,737 - -2.1
2,275,795 + -0.9
2,275,795 + +0.2
2,275,796 - -2.1
2,275,796 - +0.9
2,275,796 - -1.8
2,275,796 - -3.0
2,275,796 - -0.7
2,275,796 - -2.0

Or see this region's nucleotide sequence