Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1965

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1964 and Ga0059261_1965 are separated by 114 nucleotidesGa0059261_1965 and Ga0059261_1966 are separated by 38 nucleotidesGa0059261_1966 and Ga0059261_1967 are separated by 111 nucleotides Ga0059261_1964: Ga0059261_1964 - DNA modification methylase, at 2,070,907 to 2,072,055 _1964 Ga0059261_1965: Ga0059261_1965 - dihydropteroate synthase, at 2,072,170 to 2,073,258 _1965 Ga0059261_1966: Ga0059261_1966 - hypothetical protein, at 2,073,297 to 2,073,839 _1966 Ga0059261_1967: Ga0059261_1967 - Cytochrome B561, at 2,073,951 to 2,074,502 _1967 Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2072.032 kb on + strandat 2072.032 kb on + strandat 2072.032 kb on + strandat 2072.032 kb on + strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2072.033 kb on - strandat 2073.248 kb on + strandat 2073.248 kb on + strandat 2073.256 kb on + strandat 2073.256 kb on + strandat 2073.257 kb on - strandat 2073.257 kb on - strandat 2073.260 kb on + strandat 2073.320 kb on + strandat 2073.320 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.334 kb on + strandat 2073.335 kb on - strandat 2073.335 kb on - strandat 2073.335 kb on - strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.849 kb on + strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.850 kb on - strandat 2073.851 kb on + strandat 2073.851 kb on + strandat 2073.851 kb on + strandat 2073.852 kb on - strandat 2073.852 kb on - strandat 2073.879 kb on + strandat 2073.879 kb on + strandat 2073.880 kb on - strandat 2073.880 kb on - strandat 2073.880 kb on - strandat 2073.963 kb on + strandat 2073.963 kb on + strandat 2073.963 kb on + strandat 2073.963 kb on + strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.964 kb on - strandat 2073.972 kb on + strandat 2073.982 kb on + strandat 2073.982 kb on + strandat 2073.982 kb on + strandat 2073.983 kb on - strandat 2073.983 kb on - strandat 2074.077 kb on + strand, within Ga0059261_1967at 2074.077 kb on + strand, within Ga0059261_1967at 2074.077 kb on + strand, within Ga0059261_1967at 2074.078 kb on - strand, within Ga0059261_1967at 2074.078 kb on - strand, within Ga0059261_1967at 2074.078 kb on - strand, within Ga0059261_1967at 2074.078 kb on - strand, within Ga0059261_1967at 2074.078 kb on - strand, within Ga0059261_1967at 2074.168 kb on + strand, within Ga0059261_1967at 2074.168 kb on + strand, within Ga0059261_1967at 2074.168 kb on + strand, within Ga0059261_1967at 2074.203 kb on + strand, within Ga0059261_1967at 2074.203 kb on + strand, within Ga0059261_1967at 2074.203 kb on + strand, within Ga0059261_1967at 2074.204 kb on - strand, within Ga0059261_1967at 2074.204 kb on - strand, within Ga0059261_1967at 2074.215 kb on + strand, within Ga0059261_1967at 2074.215 kb on + strandat 2074.215 kb on + strand, within Ga0059261_1967at 2074.215 kb on + strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967at 2074.216 kb on - strand, within Ga0059261_1967

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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2,072,032 + -1.9
2,072,032 + -4.9
2,072,032 + -5.2
2,072,032 + -1.6
2,072,033 - -3.0
2,072,033 - -3.2
2,072,033 - -1.4
2,072,033 - -4.6
2,072,033 - -0.3
2,072,033 - -2.6
2,072,033 - -3.8
2,073,248 + +0.2
2,073,248 + +1.2
2,073,256 + +0.1
2,073,256 + +0.2
2,073,257 - +0.9
2,073,257 - +0.2
2,073,260 + -0.4
2,073,320 + +0.1
2,073,320 + -0.6
2,073,334 + -0.0
2,073,334 + -0.5
2,073,334 + +0.0
2,073,334 + -0.1
2,073,334 + -0.2
2,073,334 + +0.9
2,073,334 + +1.3
2,073,334 + +0.0
2,073,335 - +0.6
2,073,335 - +0.3
2,073,335 - +0.1
2,073,849 + -1.5
2,073,849 + -0.7
2,073,849 + -0.8
2,073,849 + -0.1
2,073,849 + -0.4
2,073,849 + +0.2
2,073,849 + -0.5
2,073,849 + +0.2
2,073,849 + +0.6
2,073,850 - +3.7
2,073,850 - -0.2
2,073,850 - +1.6
2,073,850 - -0.2
2,073,850 - +1.0
2,073,850 - +1.0
2,073,850 - -0.0
2,073,850 - +1.2
2,073,850 - -1.2
2,073,850 - -3.5
2,073,851 + -0.1
2,073,851 + -3.4
2,073,851 + -1.8
2,073,852 - -1.1
2,073,852 - -1.0
2,073,879 + +0.2
2,073,879 + -0.1
2,073,880 - -1.6
2,073,880 - -1.2
2,073,880 - +1.0
2,073,963 + -1.8
2,073,963 + -1.8
2,073,963 + +0.0
2,073,963 + +0.8
2,073,964 - +0.6
2,073,964 - -0.2
2,073,964 - -0.7
2,073,964 - -3.2
2,073,964 - +0.5
2,073,964 - +1.3
2,073,964 - +0.8
2,073,972 + -0.4
2,073,982 + +1.0
2,073,982 + -0.1
2,073,982 + -0.9
2,073,983 - -2.5
2,073,983 - +0.1
2,074,077 + Ga0059261_1967 0.23 +0.4
2,074,077 + Ga0059261_1967 0.23 -5.8
2,074,077 + Ga0059261_1967 0.23 -1.5
2,074,078 - Ga0059261_1967 0.23 +1.0
2,074,078 - Ga0059261_1967 0.23 -0.7
2,074,078 - Ga0059261_1967 0.23 +0.5
2,074,078 - Ga0059261_1967 0.23 -0.2
2,074,078 - Ga0059261_1967 0.23 +0.1
2,074,168 + Ga0059261_1967 0.39 +0.1
2,074,168 + Ga0059261_1967 0.39 -1.0
2,074,168 + Ga0059261_1967 0.39 +1.9
2,074,203 + Ga0059261_1967 0.46 -1.7
2,074,203 + Ga0059261_1967 0.46 +0.6
2,074,203 + Ga0059261_1967 0.46 -3.0
2,074,204 - Ga0059261_1967 0.46 +0.6
2,074,204 - Ga0059261_1967 0.46 -1.2
2,074,215 + Ga0059261_1967 0.48 -0.1
2,074,215 + -2.2
2,074,215 + Ga0059261_1967 0.48 -0.1
2,074,215 + Ga0059261_1967 0.48 +0.3
2,074,216 - Ga0059261_1967 0.48 -0.4
2,074,216 - Ga0059261_1967 0.48 +1.4
2,074,216 - Ga0059261_1967 0.48 +0.9
2,074,216 - Ga0059261_1967 0.48 +0.9
2,074,216 - Ga0059261_1967 0.48 +0.0
2,074,216 - Ga0059261_1967 0.48 -1.0
2,074,216 - Ga0059261_1967 0.48 -1.4
2,074,216 - Ga0059261_1967 0.48 -1.2

Or see this region's nucleotide sequence