Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1281

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1279 and Ga0059261_1280 are separated by 71 nucleotidesGa0059261_1280 and Ga0059261_1281 overlap by 4 nucleotidesGa0059261_1281 and Ga0059261_1282 are separated by 101 nucleotidesGa0059261_1282 and Ga0059261_1283 are separated by 278 nucleotides Ga0059261_1279: Ga0059261_1279 - Uncharacterized protein conserved in bacteria, at 1,339,568 to 1,340,632 _1279 Ga0059261_1280: Ga0059261_1280 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 1,340,704 to 1,341,363 _1280 Ga0059261_1281: Ga0059261_1281 - histidinol dehydrogenase, at 1,341,360 to 1,342,646 _1281 Ga0059261_1282: Ga0059261_1282 - NusB antitermination factor, at 1,342,748 to 1,343,209 _1282 Ga0059261_1283: Ga0059261_1283 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 1,343,488 to 1,345,221 _1283 Position (kb) 1341 1342 1343Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1340.376 kb on + strand, within Ga0059261_1279at 1340.377 kb on - strand, within Ga0059261_1279at 1340.377 kb on - strand, within Ga0059261_1279at 1340.377 kb on - strand, within Ga0059261_1279at 1340.377 kb on - strand, within Ga0059261_1279at 1340.377 kb on - strand, within Ga0059261_1279at 1340.574 kb on + strandat 1340.575 kb on - strandat 1340.575 kb on - strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.689 kb on + strandat 1340.690 kb on - strandat 1340.690 kb on - strandat 1340.690 kb on - strandat 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.965 kb on + strand, within Ga0059261_1280at 1340.966 kb on - strand, within Ga0059261_1280at 1340.966 kb on - strand, within Ga0059261_1280at 1340.966 kb on - strand, within Ga0059261_1280at 1340.966 kb on - strand, within Ga0059261_1280at 1340.992 kb on + strand, within Ga0059261_1280at 1340.992 kb on + strand, within Ga0059261_1280at 1340.993 kb on - strand, within Ga0059261_1280at 1341.079 kb on + strand, within Ga0059261_1280at 1341.079 kb on + strand, within Ga0059261_1280at 1341.080 kb on - strand, within Ga0059261_1280at 1341.080 kb on - strand, within Ga0059261_1280at 1341.080 kb on - strand, within Ga0059261_1280at 1341.080 kb on - strand, within Ga0059261_1280at 1341.158 kb on + strand, within Ga0059261_1280at 1341.158 kb on + strand, within Ga0059261_1280at 1341.158 kb on + strand, within Ga0059261_1280at 1341.159 kb on - strand, within Ga0059261_1280at 1341.159 kb on - strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.170 kb on + strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.171 kb on - strand, within Ga0059261_1280at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.744 kb on + strand, within Ga0059261_1281at 1341.745 kb on - strand, within Ga0059261_1281at 1341.745 kb on - strand, within Ga0059261_1281at 1341.768 kb on + strand, within Ga0059261_1281at 1341.887 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.948 kb on + strand, within Ga0059261_1281at 1341.949 kb on - strand, within Ga0059261_1281at 1341.949 kb on - strandat 1341.949 kb on - strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.645 kb on - strandat 1342.645 kb on - strandat 1342.669 kb on + strandat 1342.733 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.208 kb on - strandat 1343.418 kb on + strandat 1343.419 kb on - strandat 1343.419 kb on - strandat 1343.429 kb on + strandat 1343.429 kb on + strandat 1343.430 kb on - strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.452 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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1,340,376 + Ga0059261_1279 0.76 +0.9
1,340,377 - Ga0059261_1279 0.76 -0.4
1,340,377 - Ga0059261_1279 0.76 +0.4
1,340,377 - Ga0059261_1279 0.76 +0.0
1,340,377 - Ga0059261_1279 0.76 +0.2
1,340,377 - Ga0059261_1279 0.76 +0.9
1,340,574 + -0.3
1,340,575 - +0.0
1,340,575 - +0.5
1,340,689 + -3.4
1,340,689 + +0.2
1,340,689 + +0.5
1,340,689 + +1.3
1,340,689 + +0.8
1,340,689 + -0.1
1,340,689 + +1.0
1,340,690 - -4.7
1,340,690 - -3.1
1,340,690 - +0.7
1,340,965 + Ga0059261_1280 0.40 -3.1
1,340,965 + Ga0059261_1280 0.40 -3.1
1,340,965 + Ga0059261_1280 0.40 -4.7
1,340,965 + Ga0059261_1280 0.40 -3.4
1,340,965 + Ga0059261_1280 0.40 -4.7
1,340,965 + Ga0059261_1280 0.40 -2.7
1,340,965 + Ga0059261_1280 0.40 -3.3
1,340,966 - Ga0059261_1280 0.40 -2.6
1,340,966 - Ga0059261_1280 0.40 -4.2
1,340,966 - Ga0059261_1280 0.40 -6.1
1,340,966 - Ga0059261_1280 0.40 -3.5
1,340,992 + Ga0059261_1280 0.44 -3.3
1,340,992 + Ga0059261_1280 0.44 -5.0
1,340,993 - Ga0059261_1280 0.44 -4.1
1,341,079 + Ga0059261_1280 0.57 -1.6
1,341,079 + Ga0059261_1280 0.57 -4.8
1,341,080 - Ga0059261_1280 0.57 -3.3
1,341,080 - Ga0059261_1280 0.57 -3.6
1,341,080 - Ga0059261_1280 0.57 -2.0
1,341,080 - Ga0059261_1280 0.57 -4.1
1,341,158 + Ga0059261_1280 0.69 -4.9
1,341,158 + Ga0059261_1280 0.69 -5.0
1,341,158 + Ga0059261_1280 0.69 -4.2
1,341,159 - Ga0059261_1280 0.69 -3.9
1,341,159 - Ga0059261_1280 0.69 -3.1
1,341,170 + Ga0059261_1280 0.71 -3.0
1,341,170 + Ga0059261_1280 0.71 -3.2
1,341,170 + Ga0059261_1280 0.71 -6.3
1,341,170 + Ga0059261_1280 0.71 -3.6
1,341,170 + Ga0059261_1280 0.71 -4.1
1,341,170 + Ga0059261_1280 0.71 -4.1
1,341,170 + Ga0059261_1280 0.71 -4.8
1,341,170 + Ga0059261_1280 0.71 -3.5
1,341,170 + Ga0059261_1280 0.71 -4.1
1,341,170 + Ga0059261_1280 0.71 -4.6
1,341,171 - Ga0059261_1280 0.71 -4.5
1,341,171 - Ga0059261_1280 0.71 -3.0
1,341,171 - Ga0059261_1280 0.71 -4.1
1,341,171 - Ga0059261_1280 0.71 -6.1
1,341,171 - Ga0059261_1280 0.71 -3.0
1,341,171 - Ga0059261_1280 0.71 -4.6
1,341,744 + Ga0059261_1281 0.30 -3.5
1,341,744 + Ga0059261_1281 0.30 -3.9
1,341,744 + Ga0059261_1281 0.30 -2.3
1,341,744 + Ga0059261_1281 0.30 -4.4
1,341,744 + Ga0059261_1281 0.30 -4.0
1,341,744 + Ga0059261_1281 0.30 -4.4
1,341,744 + Ga0059261_1281 0.30 -2.6
1,341,745 - Ga0059261_1281 0.30 -3.0
1,341,745 - Ga0059261_1281 0.30 -3.8
1,341,768 + Ga0059261_1281 0.32 -1.9
1,341,887 + Ga0059261_1281 0.41 -1.8
1,341,907 + Ga0059261_1281 0.43 -4.6
1,341,907 + Ga0059261_1281 0.43 -4.8
1,341,907 + Ga0059261_1281 0.43 -2.5
1,341,907 + Ga0059261_1281 0.43 -2.7
1,341,907 + Ga0059261_1281 0.43 -4.4
1,341,907 + Ga0059261_1281 0.43 -1.2
1,341,907 + Ga0059261_1281 0.43 -6.0
1,341,908 - Ga0059261_1281 0.43 -4.8
1,341,908 - Ga0059261_1281 0.43 -2.9
1,341,908 - Ga0059261_1281 0.43 -3.4
1,341,948 + Ga0059261_1281 0.46 -4.4
1,341,949 - Ga0059261_1281 0.46 -4.1
1,341,949 - -1.6
1,341,949 - Ga0059261_1281 0.46 -3.9
1,342,440 + Ga0059261_1281 0.84 -4.6
1,342,440 + Ga0059261_1281 0.84 -4.3
1,342,440 + Ga0059261_1281 0.84 -3.3
1,342,440 + Ga0059261_1281 0.84 -4.5
1,342,440 + Ga0059261_1281 0.84 -4.0
1,342,441 - Ga0059261_1281 0.84 -3.5
1,342,441 - Ga0059261_1281 0.84 -4.3
1,342,441 - Ga0059261_1281 0.84 -2.5
1,342,441 - Ga0059261_1281 0.84 -2.7
1,342,441 - Ga0059261_1281 0.84 -2.5
1,342,644 + -0.3
1,342,644 + -0.9
1,342,644 + -0.2
1,342,645 - +0.1
1,342,645 - +1.8
1,342,669 + +0.6
1,342,733 + -0.8
1,343,207 + +0.8
1,343,207 + +1.0
1,343,207 + +1.6
1,343,208 - -1.1
1,343,418 + +0.3
1,343,419 - +1.6
1,343,419 - -0.1
1,343,429 + +0.2
1,343,429 + +0.1
1,343,430 - +0.9
1,343,451 + -0.3
1,343,451 + -0.3
1,343,451 + +0.1
1,343,452 - -0.1
1,343,490 - +0.1
1,343,490 - -0.4
1,343,490 - +0.3

Or see this region's nucleotide sequence